View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15398_high_2 (Length: 647)
Name: NF15398_high_2
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15398_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 157 - 638
Target Start/End: Complemental strand, 37245345 - 37244864
Alignment:
| Q |
157 |
cttgaaatgaattccttttagtccacgtttagtgtctaacaattttttgttcccaccatatctatatgggacttataatttgatgtgatccaggcatgtg |
256 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245345 |
cttgaaatgaattccttatagtccacgtttagtgtctaacaattttttgttcccaccatatctatatgggacttataatttgatgtgatccaggcatgtg |
37245246 |
T |
|
| Q |
257 |
aattttaaccataaaaagagtgtgtcaaaaagggtatactgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagt |
356 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245245 |
aattttaaccataaaaagagtgtgtcgaaaagggtatactgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagt |
37245146 |
T |
|
| Q |
357 |
aagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggtgcttaaaataagtttggatgagacttgcacgccaacttttccaaggtttt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37245145 |
aagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggtttt |
37245046 |
T |
|
| Q |
457 |
tcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtt |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245045 |
tcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtt |
37244946 |
T |
|
| Q |
557 |
tatcgttcccaagagcgttgattaggatcccacttctactaagaaatggaacgtcctgagcagtgtcgatgatgatgtccat |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37244945 |
tatcgttcccaagagcgttgattaggatcccacttctactaagaaatggaacgtcctgagcagtgtcgatgatggtgtccat |
37244864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 310 - 592
Target Start/End: Complemental strand, 37283654 - 37283372
Alignment:
| Q |
310 |
tccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggtgct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37283654 |
tccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcc |
37283555 |
T |
|
| Q |
410 |
taaaataagtttggatgagacttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatc |
509 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || || | ||| || | ||||| || | ||||| |||||||| || | ||||| |
|
|
| T |
37283554 |
taaaataagtttgaatgagacttgcacgccaacttttccacggcttcttacagtaagaaatcatactctttgtcacctcttcaagttctccttcacgatc |
37283455 |
T |
|
| Q |
510 |
catggagatttctttggccaatgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggatcccacttc |
592 |
Q |
| |
|
||| | ||||||||| ||||| ||||||||||||||||| ||| ||| || || ||||| |||||||| ||||||||||| |
|
|
| T |
37283454 |
cattgggatttcttttgccaaggagttgaacaatttggcaacagctttgtcactctcaagatagttgattatgatcccacttc |
37283372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 37245490 - 37245407
Alignment:
| Q |
12 |
aattaaaacaccagtacagatacctaatagatagatagctcatataataatgggtacaaatccatagcactggattggagatgc |
95 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37245490 |
aattaaaacaccggtacagatagctaatagatagatagctcatataataatgggtacaaatccatagcactggattggagatgc |
37245407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 296 - 455
Target Start/End: Complemental strand, 37965871 - 37965712
Alignment:
| Q |
296 |
tgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccat |
395 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||| ||||||||||| ||||| ||||||| | ||||| |||| |||| |||||||||||||||| |
|
|
| T |
37965871 |
tgtgttgttagcactccttttgataaaattgacgaaccgtgtatatagtctgaatgatagtaaaactaaaaatgaaggtagcaacaacaagagacaccat |
37965772 |
T |
|
| Q |
396 |
agcccaagggtgcttaaaataagtttggatgagacttgcacgccaacttttccaaggttt |
455 |
Q |
| |
|
|||||||||| | |||||||||| | |||||||| |||||||| |||||||||||||| |
|
|
| T |
37965771 |
agcccaagggctcctaaaataagtacgaatgagactagcacgccatcttttccaaggttt |
37965712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 330 - 592
Target Start/End: Complemental strand, 37319381 - 37319119
Alignment:
| Q |
330 |
aactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggtgcttaaaataagtttggatgaga |
429 |
Q |
| |
|
||||| ||||| |||||||| |||||| | |||||||||||| | ||||||||||||||| || |||||||| |||| ||||||||||||| |||||| |
|
|
| T |
37319381 |
aactgagtatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagagacaatagcccacgggtttctaaaataagtttgaatgaga |
37319282 |
T |
|
| Q |
430 |
cttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatccatggagatttctttggcca |
529 |
Q |
| |
|
| |||||||| |||||||| ||||| | || || | ||||| || || |||||| ||||||| | |||| ||||||| | || ||||| | || |
|
|
| T |
37319281 |
ttagcacgccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacatcaagtactccatgacgatccactgttatgtctttagaca |
37319182 |
T |
|
| Q |
530 |
atgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggatcccacttc |
592 |
Q |
| |
|
| ||||| |||||||||| |||| ||||||| | |||||||| ||||||| ||||||||||| |
|
|
| T |
37319181 |
acgagttaaacaatttggaaacaactttatcgcttccaagagcattgattatgatcccacttc |
37319119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 313 - 440
Target Start/End: Original strand, 16571841 - 16571968
Alignment:
| Q |
313 |
ttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggtgcttaa |
412 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||||||| |||||||||||||||| |||| ||||||||||| |||||||||| |||||||| | ||| |
|
|
| T |
16571841 |
ttttgataaaattgggcaattgagtaaccagtttgaatactagtaagagcaaaaagaaagatggcagcaacaagtgacaccatagaccaagggttcctaa |
16571940 |
T |
|
| Q |
413 |
aataagtttggatgagacttgcacgcca |
440 |
Q |
| |
|
||||||| || ||||| | |||||||| |
|
|
| T |
16571941 |
aataagtgtgagtgagattggcacgcca |
16571968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University