View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15398_high_6 (Length: 263)
Name: NF15398_high_6
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15398_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 1701675 - 1701928
Alignment:
| Q |
1 |
tccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaa |
100 |
Q |
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| T |
1701675 |
tccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccatattaataaa |
1701774 |
T |
|
| Q |
101 |
agtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagtta |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1701775 |
agtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctctcctatcacttcagttc |
1701874 |
T |
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| Q |
201 |
atggttacaaatattatcttgtgtttgttgatcattttactcaatattcttgga |
254 |
Q |
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| T |
1701875 |
atggttacaaatattatcttgtgtttgttgatcattttactcgatattcttgga |
1701928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 181248 - 181434
Alignment:
| Q |
1 |
tccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaa |
100 |
Q |
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| T |
181248 |
tccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcatattaataaa |
181347 |
T |
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| Q |
101 |
agtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcct |
187 |
Q |
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| T |
181348 |
agtcataagcttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttctcct |
181434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 5400484 - 5400652
Alignment:
| Q |
74 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
173 |
Q |
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| T |
5400484 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
5400583 |
T |
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| Q |
174 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc |
242 |
Q |
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| T |
5400584 |
ggggaccatcccctataacgtccattaatggttacaggtattatcttgtctttgttgaccatttcactc |
5400652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 3541459 - 3541627
Alignment:
| Q |
74 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
173 |
Q |
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||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
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| T |
3541459 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
3541558 |
T |
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| Q |
174 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc |
242 |
Q |
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| T |
3541559 |
ggggaccatcccctataacgtccatcaatggttacaagtattatcttgtctttgttgaccatttcactc |
3541627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 31098805 - 31098901
Alignment:
| Q |
145 |
tcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact |
241 |
Q |
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| T |
31098805 |
tcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttact |
31098901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 26592600 - 26592523
Alignment:
| Q |
164 |
tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact |
241 |
Q |
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| T |
26592600 |
tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgttgaccactttact |
26592523 |
T |
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