View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15398_low_1 (Length: 702)
Name: NF15398_low_1
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15398_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 9570389 - 9570777
Alignment:
| Q |
1 |
tttatgcattaatacatgcttatgagtgtgagagagagggagaaagagttgagtttggatagggactcccaactaaccgataactttatatacaattttg |
100 |
Q |
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| T |
9570389 |
tttatgcattaatacatgcttatgagtgtgagagagagggggaaagagttgagtttggatagggactcccaactaactgataactttatatacaattttg |
9570488 |
T |
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| Q |
101 |
ttgggtgtttacaaaaaatacaagtt-----gagttgagagaatatattctattttaacgacgcaagttggtccagttgataagaattcgactcaaatct |
195 |
Q |
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| T |
9570489 |
ttgggtgtttacaaaaaatacaagtttagttgagttgagagaatatattctattttaacgacgcaagttggtccagttgataaaaattcaactcaaattt |
9570588 |
T |
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| Q |
196 |
cacgaagatctgaatacaaatttcattatcgatgtaaggacttcgttggtgagtaataatatataaatacttttatcagtgctctctaaatctttaaact |
295 |
Q |
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| T |
9570589 |
cacaaagatctggatacaaatttcattgtcgatgtaaggacctcgttggtgagtaataatatataaatacttttatcagtgctctctaaatctttagact |
9570688 |
T |
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| Q |
296 |
cgcattagctctggtgagtcccttagacccaactcgccnnnnnnntatatctattttgagtgttaattacaaaactgtcacataactac |
384 |
Q |
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| T |
9570689 |
cgcattagttctggtgagtcccttagacccaactcgtaaaaaaaaaaaatctattttgagtgttaattacaaaactgtcacataactac |
9570777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 448 - 684
Target Start/End: Original strand, 9570841 - 9571077
Alignment:
| Q |
448 |
agtaattcatcaactccattaattgttataaacaaaatcacctagtcccttgaatacattatcatacatgaacaaaggggtcctttttgactttacctct |
547 |
Q |
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| T |
9570841 |
agtaattcatcaactccattaattgttataaacaaaatcacctagtcccttgaatacattatcatacatgaacaaaggggtcctttttgactttacctct |
9570940 |
T |
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| Q |
548 |
aagagagtccttttagaaattctgaaagtaaacccaagcctttgacataaatttaaagcttatccaaatttgattttctttctcttactttttgagaggt |
647 |
Q |
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| T |
9570941 |
aagagagtccttttagaaattctcaaagtaaacccaagcctttgacataaatttaaagcttatccaaatttgattttctttctcttactttttgagaggt |
9571040 |
T |
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| Q |
648 |
ctgaaactctggttcacaaatgtgtctctcaagtctc |
684 |
Q |
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| T |
9571041 |
ctgaaactctggttcacaaatgtgtctctcaagtctc |
9571077 |
T |
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