View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15398_low_3 (Length: 401)
Name: NF15398_low_3
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15398_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 10681567 - 10681188
Alignment:
| Q |
18 |
cccacaaaccaaataggtactaatatgatgtaacctatccactcgtcggttttcgaccaataaaccgaacatccaatcgatgatcctagtatgagaaaaa |
117 |
Q |
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| T |
10681567 |
cccacaaaccaaataggtactaatatagtgtaaccaatccactcgtcggttttcgaccaataaaccgaacatccaatcgatgatcctagtatgagaaaaa |
10681468 |
T |
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| Q |
118 |
tgaatccaagaaatttcataacatcaaacctagaagtcacacctctaacacaatatctcctaaccaatagagacaatgccacaagtgaaaaaaggaacaa |
217 |
Q |
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| T |
10681467 |
tgaatccgagaaatttcataacatcaaacctagaagtcacacctctaacacaatatctcctaaccaatagagacaatgccacaagtgaaaaaaggaacaa |
10681368 |
T |
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| Q |
218 |
agttgaaattgaaagtaaattagcaagaatatcaaggctagtgaaaaatgcaacaatagcagttgcaataaacataacaacagttgcattaactggtgtc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10681367 |
agttgaaattgaaagtaaattagcaagaatatcaaggctagtgaaaaatgcaacaatagcagttgcaataaacataacaacagttgcgttaactggtgtc |
10681268 |
T |
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| Q |
318 |
ttagnnnnnnnattcactcttgcaagccatgaaggtaacaaacttgttcttgccatgtgtgtgagataccttgcttgacc |
397 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10681267 |
ttagtttttttattcactcttgcaagccatgaaggtaacaaacttgttcttgccatgtgtgtgagatatcttgcttgacc |
10681188 |
T |
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