View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15398_low_4 (Length: 386)
Name: NF15398_low_4
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15398_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 6179899 - 6179558
Alignment:
| Q |
19 |
ttaaaaacacaagacttatcaaatctcattcagatgtggtacacattatttgaagtatgtgtagaattcggttgagttgccnnnnnnnnccatgatttta |
118 |
Q |
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| T |
6179899 |
ttaaaaacacaagacttatcaaatcacattcagatgtggtacacattatttgatgcatgtgtagaattcggttgagttgc--aaaaaaaccatgatttta |
6179802 |
T |
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| Q |
119 |
annnnnnnnaatatttttattaaatataaaactcatcattgaacgatgagttttcaataagacaaaggagactagatcgaaaatgaagaaatagagatag |
218 |
Q |
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| T |
6179801 |
attttttt-aatatttttattaaatataaaactcatcattgaacgatgagttttcaataagacaaaggaga--agatcgaaaatgaaaaaatagagatag |
6179705 |
T |
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| Q |
219 |
atgcaagaaacattttgagagtgtgggtttttgtgtggatgagagaaagagtttgatgctagaaacaacgagagatttgtggctctaattttgtaagagt |
318 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179704 |
atgcaagaaacattttgagagtgtgg------------atgagagaaagagtttgatgctagaaacaacgagagatttgtggctctaattttgtaagagt |
6179617 |
T |
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| Q |
319 |
gagaaagaaagtgtgagtgagaaaatcaacactcacaaaataaagcttagtagtataat |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179616 |
gagaaagaaagtgtgagtgagaaaatcaacactcacaaaataaagcttagtagtataat |
6179558 |
T |
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