View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15398_low_5 (Length: 340)

Name: NF15398_low_5
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15398_low_5
NF15398_low_5
[»] chr2 (50 HSPs)
chr2 (5-324)||(10468004-10468318)
chr2 (4-223)||(10444728-10444961)
chr2 (141-324)||(10458332-10458515)
chr2 (38-261)||(10483870-10484095)
chr2 (41-324)||(10539358-10539643)
chr2 (182-321)||(10539953-10540092)
chr2 (1-223)||(10501864-10502095)
chr2 (1-324)||(10855873-10856206)
chr2 (70-320)||(10513116-10513361)
chr2 (184-324)||(10502062-10502202)
chr2 (1-135)||(10539847-10539983)
chr2 (173-302)||(7468383-7468512)
chr2 (41-260)||(10484773-10484994)
chr2 (173-324)||(10484408-10484559)
chr2 (215-321)||(10468292-10468398)
chr2 (172-324)||(10502364-10502516)
chr2 (1-269)||(10540291-10540571)
chr2 (38-323)||(10468831-10469119)
chr2 (57-312)||(10484118-10484371)
chr2 (1-192)||(7465904-7466097)
chr2 (229-324)||(10468539-10468634)
chr2 (1-133)||(10855459-10855597)
chr2 (57-135)||(7468570-7468650)
chr2 (54-135)||(10468441-10468524)
chr2 (182-268)||(10512871-10512957)
chr2 (1-324)||(10502659-10502991)
chr2 (188-324)||(10539661-10539798)
chr2 (7-133)||(10467897-10468031)
chr2 (253-324)||(10501778-10501849)
chr2 (1-137)||(10458220-10458365)
chr2 (38-323)||(10458783-10459075)
chr2 (38-268)||(10894401-10894631)
chr2 (1-137)||(7464848-7464993)
chr2 (52-132)||(9078299-9078381)
chr2 (172-324)||(7465291-7465443)
chr2 (1-163)||(10501640-10501811)
chr2 (1-137)||(10513880-10514025)
chr2 (1-94)||(10539291-10539391)
chr2 (58-130)||(27964018-27964092)
chr2 (58-130)||(28107783-28107857)
chr2 (182-268)||(10483592-10483677)
chr2 (100-135)||(10502247-10502282)
chr2 (3-38)||(10502655-10502690)
chr2 (40-130)||(10513006-10513098)
chr2 (236-294)||(7465843-7465901)
chr2 (190-244)||(7468734-7468788)
chr2 (38-137)||(10540137-10540236)
chr2 (1-38)||(10855869-10855906)
chr2 (236-268)||(10513747-10513779)
chr2 (184-268)||(10855321-10855405)
[»] chr7 (1 HSPs)
chr7 (242-324)||(8670754-8670836)
[»] chr1 (4 HSPs)
chr1 (1-94)||(24049948-24050048)
chr1 (2-130)||(24050245-24050382)
chr1 (196-267)||(18488808-18488879)
chr1 (209-268)||(24050458-24050518)
[»] chr4 (1 HSPs)
chr4 (196-267)||(17733333-17733404)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 50)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 324
Target Start/End: Complemental strand, 10468318 - 10468004
Alignment:
Q  5 agcttttactagtttaatgaggcatgaagcatgacaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttatattgtt--ga 102  Q
    |||||||||||||||||||||||||||       |||||||||||| |||| ||||||||||| ||||| ||||||||| ||||||||||||||||  ||    
T  10468318 agcttttactagtttaatgaggcatga-------caatatgcagtggtgtgcactcataagataactttcatgtctctgttttcatttatattgttttga 10468226  T
Q  103 gactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagtttatagatgt 202  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  10468225 gactagtgattttgtggctgaagcctttcttgtcttcgaatgcaggttccttattcaactgagccgcggaaggatgatttgggggttagtttttagatgt 10468126  T
Q  203 tcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttccttgtctatttaaaatctaattttggctttta 302  Q
    |||| ||||||| |||||||| ||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||  ||||||    
T  10468125 tcattgtgatttctggatcttcccattaaattgaatgtctttggggaacttttgtattattgttctgccttgtctatttaaaatctaatttttactttta 10468026  T
Q  303 ttagtttaataaggcatgaaac 324  Q
    |||||||||| |||||||||||    
T  10468025 ttagtttaatgaggcatgaaac 10468004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 10444961 - 10444728
Alignment:
Q  4 tagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttatat 96  Q
    ||||||| ||||||||||||||||||||| |||||       |||||||||||| |||| ||||||||||||| ||| ||||||| |||||||||||| |    
T  10444961 tagctttcactagtttaatgaggcatgaaacatgattgacaacaatatgcagtggtgtgcactcataagatcattttcatgtctccgctttcatttattt 10444862  T
Q  97 tgttgagact-------agtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggtt 189  Q
    ||||||||||       ||||||||||||||||||||||||||||||||  |||||| ||| ||||||| ||||| |  |||||||||| ||||||||||    
T  10444861 tgttgagacttgagactagtgattttgtggctgaagcctttcttctcttctaatgcaggttccttattctactgatctacggaaggatgctttgggggtt 10444762  T
Q  190 agtttatagatgttcatcgtgatttgtggatctt 223  Q
    ||| | ||||| |||| | |||||||||||||||    
T  10444761 agtgtttagattttcaccatgatttgtggatctt 10444728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 141 - 324
Target Start/End: Complemental strand, 10458515 - 10458332
Alignment:
Q  141 aatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgt 240  Q
    |||||| ||| |||||| || |||||| |  ||||||||||||||||||||||| ||||| |||| | ||||||||||||||| ||| |||||| |||||    
T  10458515 aatgcaggttccttatttgattgagccgcaaaaggatgatttgggggttagtttttagattttcaccatgatttgtggatcttcccattaaatttaatgt 10458416  T
Q  241 ctttggagaacttttgtataattgttcttccttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
    ||||||||||| ||||||||||||||||  | | |||||||||| ||||||||| ||||||| ||||||||  |||||||||||    
T  10458415 ctttggagaacatttgtataattgttctgtcatatctatttaaattctaattttagcttttactagtttaacgaggcatgaaac 10458332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 261
Target Start/End: Complemental strand, 10484095 - 10483870
Alignment:
Q  38 acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttatattg--ttgagactagtgattttgtggctgaagcctttcttct 135  Q
    ||||| ||||| | |||| |||||||| |||| ||| |||||||||||||||||| |||||  || | | |||||||||| || |||| || ||||||||    
T  10484095 acaatgtgcagcggtgtgcactcataaaatcattttcatgtctctgctttcatttgtattgattttacattagtgattttatgcctgacgcatttcttct 10483996  T
Q  136 ctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattg 235  Q
    ||   |||||| ||| |||||||||||||||| || |||||||||||||||||| |||| ||||| ||||||   | |||||||| || ||| |||||||    
T  10483995 ctgcaaatgcaggttccttattcgactgagccacgaaaggatgatttgggggtttgtttttagattttcatcactagttgtggatattcccattaaattg 10483896  T
Q  236 aatgtctttggagaacttttgtataa 261  Q
    ||| ||||||||||||||||||||||    
T  10483895 aatatctttggagaacttttgtataa 10483870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 41 - 324
Target Start/End: Complemental strand, 10539643 - 10539358
Alignment:
Q  41 atatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttatattgttg--agactagtgattttgtggctgaagcctttcttctctt 138  Q
    |||||||||| |||| ||||  ||||||| ||| |||||||||||||||||||| |||||   |||| ||||||||||||| ||||||||||||||||||    
T  10539643 atatgcagtggtgtgcactctgaagatcattttcatgtctctgctttcatttattttgtttttagaccagtgattttgtggttgaagcctttcttctctt 10539544  T
Q  139 tgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaat 238  Q
      ||||||  || ||||||||  ||||   || ||||||||||||||||||||||| ||||| ||||   |||||||| |||||| ||| ||| |  |||    
T  10539543 ccaatgcagcttccttattcgtatgagaagcgaaaggatgatttgggggttagtttttagattttcactatgatttgttgatcttcccattaactcaaat 10539444  T
Q  239 gtctttggagaacttttgtataattgttcttccttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
     |||||| |  ||||| |||||| |||||| || | |||| ||||| ||||||||| | | ||| ||||||||| |||||||||||    
T  10539443 atctttgaatcactttggtataagtgttctgccatatctaattaaattctaattttaggtattactagtttaatgaggcatgaaac 10539358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 10540092 - 10539953
Alignment:
Q  182 tgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttccttgtctattt 281  Q
    ||||||||||||| ||||| |||| | |||||||||||||||  || ||||| ||||||||||||||||||||||||||||||||||||| | |||||||    
T  10540092 tgggggttagtttttagattttcaccatgatttgtggatcttctcattaaatcgaatgtctttggagaacttttgtataattgttcttccatatctattt 10539993  T
Q  282 aaaatctaattttggcttttattagtttaataaggcatga 321  Q
    ||| | ||||||| ||||||  ||||||||| ||||||||    
T  10539992 aaattgtaattttagcttttcctagtttaatgaggcatga 10539953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10502095 - 10501864
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    ||||||||||||||||||||||||| |||||| |||||       || ||||||||| || | ||||||| ||| | ||| | ||||||||| |||||||    
T  10502095 ttttagcttttactagtttaatgagacatgaaacatgattaaaaacagtatgcagtggtgcgcactcatacgattattttcacgtctctgctctcattta 10501996  T
Q  94 tattgtt--gagactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttag 191  Q
    | |||||  || ||||||||||||||||||||||||||||||| ||   |||||| ||| |||||||||||||| | || |||  |||||| ||||||||    
T  10501995 ttttgttttgacactagtgattttgtggctgaagcctttcttccctgcaaatgcaggttccttattcgactgagtcgcgaaagcttgatttaggggttag 10501896  T
Q  192 tttatagatgttcatcgtgatttgtggatctt 223  Q
    | | ||||| ||||| ||||||||||||||||    
T  10501895 tatttagattttcattgtgatttgtggatctt 10501864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 10856206 - 10855873
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatg------acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat 94  Q
    ||||||||||||||| |||||||||||||||| ||||      | |||| ||| || |||| ||||||||||||| ||| |||||||||||||  |||||    
T  10856206 ttttagcttttactattttaatgaggcatgaaacatggttgcaaaaatacgcaatggtgtgcactcataagatcattttcatgtctctgcttttgtttat 10856107  T
Q  95 ---attgttgagactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttag 191  Q
       ||| || ||||||||||||||||||||||||||||||||||||   |||||| ||| || ||| || || |   || || |||||  ||| ||||||    
T  10856106 tgcatt-ttaagactagtgattttgtggctgaagcctttcttctctgcaaatgcaggttcctcatttgattgggttgcgtaatgatgaggtggaggttag 10856008  T
Q  192 tttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttcc--ttgtctatttaaaatcta 289  Q
    ||| || || |||| | ||||||||||||||  | | ||||| |||||||||||||||||||||||| || |||||| ||   | ||| |||||| || |    
T  10856007 tttttaaattttcaccatgatttgtggatctcccaattaaatcgaatgtctttggagaacttttgtaaaactgttctgccatatctctttttaaattcaa 10855908  T
Q  290 attttggcttttattagtttaataaggcatgaaac 324  Q
    ||||| ||||||| ||||||| | |||||||||||    
T  10855907 attttagcttttactagtttagtgaggcatgaaac 10855873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 70 - 320
Target Start/End: Complemental strand, 10513361 - 10513116
Alignment:
Q  70 ctttaatgtctctgctttcatttatattgttgagactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagcccc 169  Q
    |||| ||||||||||||||||| || || || | ||||||||||||| ||||||||||||    || ||  |||||| ||| ||||| |||||||||| |    
T  10513361 ctttcatgtctctgctttcatt-attttttttaaactagtgattttgcggctgaagcctt----cttttcaaatgcaggttccttatacgactgagccgc 10513267  T
Q  170 ggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttctt 269  Q
    |||||||||| |||||||||||||| ||||| |||| | ||||| ||| ||| | ||| ||||||||||||||| |||||| |||||||| ||| || |     
T  10513266 ggaaggatgacttgggggttagtttttagattttcaccttgattagtgaatcatcccattaaattgaatgtcttgggagaaattttgtattatttttttg 10513167  T
Q  270 ccttgtctatttaaaatctaattttggcttttattagtttaataaggcatg 320  Q
    || | |||||||||| ||||||||| ||| ||| |||| |||  |||||||    
T  10513166 ccatatctatttaaattctaattttagctcttagtagtctaaagaggcatg 10513116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 10502202 - 10502062
Alignment:
Q  184 ggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttccttgtctatttaa 283  Q
    ||||||||||| || || |||| | ||||||||||||||| ||| ||||| || |||||||||||||||||||||||| |||| | || | |||||||||    
T  10502202 ggggttagtttttacattttcaccatgatttgtggatcttcccattaaatcgattgtctttggagaacttttgtataactgttttgccatatctatttaa 10502103  T
Q  284 aatctaattttggcttttattagtttaataaggcatgaaac 324  Q
    | ||||||||| ||||||| ||||||||| || ||||||||    
T  10502102 attctaattttagcttttactagtttaatgagacatgaaac 10502062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 10539983 - 10539847
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatgacaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat---att 97  Q
    ||||||||||| |||||||||||||||||||   |  ||||||||||||| |||| |||||| | |||| ||| ||||||||||||||||||||   |||    
T  10539983 ttttagcttttcctagtttaatgaggcatgattgaacacaatatgcagtggtgtgaactcattatatcattttcatgtctctgctttcatttattgcatt 10539884  T
Q  98 gttgagactagtgattttgtggctgaagcctttcttct 135  Q
     ||||||| |||||||||||||||||||||||||||||    
T  10539883 -ttgagacaagtgattttgtggctgaagcctttcttct 10539847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 302
Target Start/End: Original strand, 7468383 - 7468512
Alignment:
Q  173 aggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttcct 272  Q
    |||||||  ||||||||||||| ||| | |||| | ||||||||||||||| ||| ||| | |||||||||||  |||||||||||||||||||||| |     
T  7468383 aggatgagatgggggttagtttttagtttttcaccatgatttgtggatcttcccattaagtcgaatgtctttgctgaacttttgtataattgttctttca 7468482  T
Q  273 tgtctatttaaaatctaattttggctttta 302  Q
    |||||||||||| ||||||||| |||||||    
T  7468483 tgtctatttaaattctaattttagctttta 7468512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 10484994 - 10484773
Alignment:
Q  41 atatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagcctttcttctct 137  Q
    |||||| ||| |||| ||||||||||||| ||| |||| ||| |||||||||||   ||| |||||||| |||||||||| ||||||| ||||||||| |    
T  10484994 atatgcggtggtgtgcactcataagatcattttcatgtatcttctttcatttattgtatt-ttgagacttgtgattttgttgctgaagtctttcttcttt 10484896  T
Q  138 ttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaa 237  Q
       |||||| ||| || |||||| ||||   || || |||||  | ||||||||||| ||||| |||  | ||||||||||||||| | |  ||||||||    
T  10484895 gcaaatgcaggttcctgattcgattgaggtgcgaaaagatgagatcggggttagtttttagattttcgccatgatttgtggatcttcctataaaattgaa 10484796  T
Q  238 tgtctttggagaacttttgtata 260  Q
    |||||||||||||||||||||||    
T  10484795 tgtctttggagaacttttgtata 10484773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 324
Target Start/End: Complemental strand, 10484559 - 10484408
Alignment:
Q  173 aggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttcct 272  Q
    |||||||  ||||||||||||| ||||| |||| | ||||||||||||||| ||| |||||  |||||||||| ||||||||||||||| ||||| |||     
T  10484559 aggatgagatgggggttagtttttagattttcaccatgatttgtggatcttcccattaaatcaaatgtctttgcagaacttttgtataaatgttcatcca 10484460  T
Q  273 tgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
    | ||||| |||| | ||||||| ||||||| |  |||||| ||||| |||||    
T  10484459 tatctatataaattttaattttagcttttacttatttaatgaggcacgaaac 10484408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 321
Target Start/End: Complemental strand, 10468398 - 10468292
Alignment:
Q  215 gtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttccttgtctatttaaaatctaattttggcttttattagtttaataa 314  Q
    |||||| || ||| ||||| |||||||||||||||||||||| |||||||||||| | | |||||||||| ||||||||  ||||||| ||||||||| |    
T  10468398 gtggatatttccattaaatcgaatgtctttggagaacttttggataattgttctttcatatctatttaaattctaatttcagcttttactagtttaatga 10468299  T
Q  315 ggcatga 321  Q
    |||||||    
T  10468298 ggcatga 10468292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 324
Target Start/End: Complemental strand, 10502516 - 10502364
Alignment:
Q  172 aaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttcc 271  Q
    ||||||||  ||||||||||||| ||||| |||| | ||||||||||||||| ||| ||||| |||||||||||||||||||||| || ||||||| |||    
T  10502516 aaggatgagatgggggttagtttttagattttcaccatgatttgtggatcttcccattaaatcgaatgtctttggagaacttttgcattattgttcatcc 10502417  T
Q  272 ttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
     |  ||||  | | | ||||||| ||||||| ||  ||||| |||||||||||    
T  10502416 atagctatgcatattttaattttagcttttactaaattaatgaggcatgaaac 10502364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 10540571 - 10540291
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    ||||| |||||||||||||||||||||||||   ||||       |||||||||||| |||| ||||| | | ||| ||| |||||||||||||||||||    
T  10540571 ttttatcttttactagtttaatgaggcatgacaaatgattgagagcaatatgcagtggtgtgcactcacatgctcattttcatgtctctgctttcattta 10540472  T
Q  94 t--attgttgagact----agtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagccccggaaggatgatttggggg 187  Q
    |  | | || |||||    ||| |||||||| ||||||| ||||||||||   |||||| ||| || |||||| |||||| ||||  |||||  ||||||    
T  10540471 ttgaattttcagactgactagtaattttgtgactgaagcgtttcttctctccaaatgcaggttcctcattcgattgagccgcggatagatgaaatggggg 10540372  T
Q  188 ttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttctt 269  Q
    ||||||| | ||| ||||   ||||||||||||||| || || |||  | |||||||| ||||||||||||||||| |||||    
T  10540371 ttagtttttcgattttcactatgatttgtggatctt-cccattaatcaattgtctttgcagaacttttgtataattattctt 10540291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 323
Target Start/End: Complemental strand, 10469119 - 10468831
Alignment:
Q  38 acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttatattg---ttgagactagtgattttgtggctgaagcctttcttc 134  Q
    ||||||||||||| |||| ||||||||||||| ||| ||||||||||||| ||||||  ||   |||| |||||||||||||| | |||||| |||||||    
T  10469119 acaatatgcagtggtgtgtactcataagatcattttcatgtctctgctttaatttat--tgcatttgaaactagtgattttgttgttgaagcttttcttc 10469022  T
Q  135 tctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaatt 234  Q
    |||   |||||| ||| || |||| | |||    || || |||||  | ||||||||||| ||||| |||| | |||||||| ||| |   || |||||     
T  10469021 tctgcaaatgcaggttcctgattcaattgaaatgcgaaaagatgagatcggggttagtttttagattttcaccttgatttgttgatatcctcattaaatc 10468922  T
Q  235 gaatgtctttggagaacttttgtataattgttcttccttgtctatt--taaaatctaattttggcttttattagtttaataaggcatgaaa 323  Q
    ||||  || |||||||||||||| |||||||||| || | ||||||  |||| ||| ||||| || |||  ||||||||| ||||||||||    
T  10468921 gaattcctatggagaacttttgtctaattgttctgccatatctatttctaaattcttattttagcattttctagtttaatgaggcatgaaa 10468831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 57 - 312
Target Start/End: Complemental strand, 10484371 - 10484118
Alignment:
Q  57 actcataagatcactttaatgtctctgctttcatttatat--tgttgagactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttctt 154  Q
    ||||||||||||| |||  | | ||||||||||||||||   | |||||||| |||||||||||||||||||||||||||| |   |||||| ||| |||    
T  10484371 actcataagatcatttttgtatttctgctttcatttatagcattttgagactggtgattttgtggctgaagcctttcttctttgaaaatgcaggttcctt 10484272  T
Q  155 attcgactgagccccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttt 254  Q
    ||  || || |     |||  ||||  | ||||||||||| || || |||| | ||| ||||||||||| ||| ||||  ||||||||||||||||| ||    
T  10484271 atgtgattggg---ttgaataatgaggt-ggggttagtttttacattttcaccatgaattgtggatcttcccattaaaccgaatgtctttggagaacatt 10484176  T
Q  255 tgtataattgttcttccttgtctatttaaaatctaattttggcttttattagtttaat 312  Q
    | |||||||||||| || | ||| |||||| ||||||||| ||||||| || ||||||    
T  10484175 tatataattgttctgccatatctctttaaattctaattttagcttttactaatttaat 10484118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7465904 - 7466097
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    |||||||||||||||  |||||||||| |||| |||||       |||||||||||| |||| |||||||  |||| ||| ||||||||||| ||||||     
T  7465904 ttttagcttttactaaattaatgaggcttgaaacatgattaaaaacaatatgcagtggtgtgcactcatacaatcattttcatgtctctgctctcatttg 7466003  T
Q  94 tattgttgagactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagt 192  Q
    | ||    ||||  |||||||||||||||||||||||||||||    |||||| ||| | ||||| ||||||   ||||||||||||||||||||||||    
T  7466004 tttta---agac--gtgattttgtggctgaagcctttcttctccgcaaatgcaggttccatattcaactgagatgcggaaggatgatttgggggttagt 7466097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 324
Target Start/End: Complemental strand, 10468634 - 10468539
Alignment:
Q  229 taaattgaatgtctttggagaacttttgtataattgttcttccttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
    |||||| ||||| |||||||||||||||||||| ||||||||| | || ||||||| ||||||||| ||||||| ||||||||  | |||||||||    
T  10468634 taaattaaatgtttttggagaacttttgtataaatgttcttccatatccatttaaattctaattttagcttttactagtttaacgaagcatgaaac 10468539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 10855597 - 10855459
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatgac----aatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat-- 94  Q
    ||||| |||||||||||||||||||||||||| || |||    |  |||   || |||| ||||||||||||| ||| ||||||||||||||||||||      
T  10855597 ttttaacttttactagtttaatgaggcatgaaacacgactgaaacaatgtcatggtgtgcactcataagatcattttcatgtctctgctttcatttattg 10855498  T
Q  95 -attgttgagactagtgattttgtggctgaagcctttctt 133  Q
     ||| || |||||||| |||||||||||||||||||||||    
T  10855497 catt-ttaagactagttattttgtggctgaagcctttctt 10855459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 7468570 - 7468650
Alignment:
Q  57 actcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagcctttcttct 135  Q
    ||||||||||||| ||| || | |||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||    
T  7468570 actcataagatcattttcatatttctgctttcatttattgcatt-ttgagactagtgattttgtggctgaagcctttcttct 7468650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 10468524 - 10468441
Alignment:
Q  54 tggactcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagcctttcttct 135  Q
    |||||||||||||||| ||| | ||||||||||||||||||   ||| ||||||||||||||||||||||| ||| |||||||||    
T  10468524 tggactcataagatcattttcaagtctctgctttcatttattgcatt-ttgagactagtgattttgtggctaaagtctttcttct 10468441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 10512957 - 10512871
Alignment:
Q  182 tgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttct 268  Q
    ||||| ||||||| || || |||| | |||||| ||||||||  ||||| |||||||||| ||||||||||||||||||||||||||    
T  10512957 tggggattagtttttaaattttcaccatgatttatggatcttttcaatatattgaatgtcattggagaacttttgtataattgttct 10512871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 10502991 - 10502659
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    ||||||||||||| ||||||||||||||||||  || |       ||||||| |||| |||| |||| ||||||||  || |||| | ||||||||||||    
T  10502991 ttttagcttttaccagtttaatgaggcatgaaaaataattgtaaacaatatgtagtggtgtgcactcgtaagatcatcttcatgtttgtgctttcattta 10502892  T
Q  94 t---attgttgagactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggtta 190  Q
    |   ||| |||| ||| |||||||||| ||||||||| |||||||||   ||||||  || || || ||| ||||   || || |||||  | |||||||    
T  10502891 ttgcatt-ttgatactcgtgattttgttgctgaagccattcttctctgcaaatgcagattcctgatgcgattgagatgcgaaaagatgagatcggggtta 10502793  T
Q  191 gtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttcc--ttgtctatttaaaatct 288  Q
    |||| ||||| |||| | |||||||||||||||     ||||| |||||||||  ||||| ||||||||| ||||||| ||   | ||| |||||| |||    
T  10502792 gtttttagattttcaccatgatttgtggatcttcatcttaaatcgaatgtctt--gagaatttttgtatacttgttctgccatatctctctttaaattct 10502695  T
Q  289 aattttggcttttattagtttaataaggcatgaaac 324  Q
     || || ||||||| ||||||||| |||||||||||    
T  10502694 gatattagcttttactagtttaatgaggcatgaaac 10502659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 324
Target Start/End: Complemental strand, 10539798 - 10539661
Alignment:
Q  188 ttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttccttgtctatttaaaatc 287  Q
    ||||||| || || |||| |||||| ||||||| ||  || |||||| |||||||||||||||||||||||||||||||   || | ||| ||| || ||    
T  10539798 ttagtttttacatattcaccgtgatatgtggattttatcattaaattcaatgtctttggagaacttttgtataattgtttggccatatctctttcaattc 10539699  T
Q  288 taattttggctttt-attagtttaataaggcatgaaac 324  Q
    ||||||| |||||| | |||| || |||||||||||||    
T  10539698 taattttagcttttaactagtctagtaaggcatgaaac 10539661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 10468031 - 10467897
Alignment:
Q  7 cttttactagtttaatgaggcatgaagcatga-----caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat---attg 98  Q
    |||||| ||||||||||||||||||| |||||     || ||||| ||| |||| |||| |||||||| |||  |||| |||| |||||||||   ||      
T  10468031 cttttattagtttaatgaggcatgaaacatgattgaacactatgcggtggtgtgcactcttaagatcattttcctgtcactgccttcatttattgcatat 10467932  T
Q  99 ttgagactagtgattttgtggctgaagcctttctt 133  Q
    ||||||||||||||| |||||||||||||||||||    
T  10467931 ttgagactagtgattctgtggctgaagcctttctt 10467897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 10501849 - 10501778
Alignment:
Q  253 tttgtataattgttcttccttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
    ||||||| |||||||| || |||||||||||| |||| |||| ||||||| ||||||||| |||||||||||    
T  10501849 tttgtatgattgttctgccatgtctatttaaattctagttttagcttttaatagtttaatgaggcatgaaac 10501778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 10458365 - 10458220
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatg-------acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    ||||||||||||||||||||| |||||||||| ||||       |||||||| ||||  ||| || ||| |||||  ||| |||||||| | ||||||||    
T  10458365 ttttagcttttactagtttaacgaggcatgaaacatgtctgaaaacaatatggagtgaagtgcacccattagatccttttcatgtctcttccttcattta 10458266  T
Q  94 t---attgttgagactagtgattttgtggctgaagcctttcttctct 137  Q
    |   ||| ||||| ||||| |||||||||||||||||||||||||||    
T  10458265 ttgcatt-ttgagtctagttattttgtggctgaagcctttcttctct 10458220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 323
Target Start/End: Complemental strand, 10459075 - 10458783
Alignment:
Q  38 acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagcctttcttc 134  Q
    ||||||||||||| |||| ||||||||||||| ||| |||||||| ||||||||| |   | | |||||||| |||||||||| |||||||| || ||||    
T  10459075 acaatatgcagtggtgtgcactcataagatcattttcatgtctcttctttcatttgttgcaat-ttgagacttgtgattttgttgctgaagctttacttc 10458977  T
Q  135 tctttgaatgcaagtttcttattcgactgagcc---ccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataa 231  Q
    |||   |||||| ||| || |||   ||||| |    || ||| || |  | ||||||||||| ||||| ||||||  | |||||||||| | ||| |||    
T  10458976 tctgcaaatgcaggttcctcatttttctgaggcggtgcgaaagtataagatcggggttagtttttagattttcatcaagttttgtggatcctcccattaa 10458877  T
Q  232 attgaatgtctttggagaacttttgtataattgttcttc--cttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaa 323  Q
    ||  |||||||||| ||||||||||||| ||| |||| |    | ||| |||||| ||||||||| |||| || ||||||||  ||||||||||    
T  10458876 atcaaatgtctttgaagaacttttgtattatttttctgcgatctctctttttaaattctaattttagcttatactagtttaacgaggcatgaaa 10458783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 268
Target Start/End: Original strand, 10894401 - 10894631
Alignment:
Q  38 acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttatattgttgagactagtgattttgtggctgaagcctttcttctct 137  Q
    ||||||||||||| | || ||||||||||  | ||| |||||||||||||||||| |    || ||||||| ||||||||||||||||||| |  |||||    
T  10894401 acaatatgcagtggtatgcactcataagactattttgatgtctctgctttcattttttgcattcagactagcgattttgtggctgaagcctcttatctct 10894500  T
Q  138 ttgaatgcaagtttcttattcgactgagccccggaaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaa 237  Q
     |||||||| ||| ||  || |  | ||   || || ||||| |||| ||||| |||| | || || | | |||| |||| ||||| ||| |||||  ||    
T  10894501 ctgaatgcaggttcctagtttgtatcagaggcgtaatgatgagttggaggttattttaaatatttttaccatgatctgtgtatcttcccattaaatctaa 10894600  T
Q  238 tgtctttggagaacttttgtataattgttct 268  Q
    ||||||||| ||||||||||||| |||||||    
T  10894601 tgtctttggggaacttttgtatagttgttct 10894631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7464848 - 7464993
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagca----tg---acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    ||||||||||||| ||||||||||||||||||  |    ||   ||||||||||||| |||| |||  |||||| | ||| |||||| ||||||||||||    
T  7464848 ttttagcttttaccagtttaatgaggcatgaaaaacaattgtaaacaatatgcagtggtgtgcacttgtaagataattttcatgtctgtgctttcattta 7464947  T
Q  94 t---attgttgagactagtgattttgtggctgaagcctttcttctct 137  Q
    |   ||| |||||||| |||||||||  |||||||||||||||||||    
T  7464948 ttgcatt-ttgagacttgtgattttgatgctgaagcctttcttctct 7464993  T

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Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 9078299 - 9078381
Alignment:
Q  52 tgtggactcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagcctttct 132  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||   ||| ||| | ||||||||||||||||||||| ||||||    
T  9078299 tgtgcactcataagatcattttcatgtctctgctttcatttattgcatt-ttgtgtctagtgattttgtggctgaagtctttct 9078381  T

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Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 324
Target Start/End: Original strand, 7465291 - 7465443
Alignment:
Q  172 aaggatgatttgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttcttcc 271  Q
    ||||||||  ||||||||||||| ||| | |||| | |||||| |||||||| | | |||||  ||||||||||||||||||||| || || |||| |||    
T  7465291 aaggatgagatgggggttagtttttagtttttcaccatgatttttggatcttcctattaaatcaaatgtctttggagaacttttgcattatcgttcatcc 7465390  T
Q  272 ttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
     |  |||| |||| | ||||||| ||||||| ||  ||||| || ||||||||    
T  7465391 atagctatgtaaattttaattttagcttttactaaattaatgagccatgaaac 7465443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10501811 - 10501640
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatg-------acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    |||||||||||| ||||||||||||||||||| ||||       |||||||||||   |||| ||||| ||||||| ||| |||||||||| ||| ||||    
T  10501811 ttttagcttttaatagtttaatgaggcatgaaacatgattgaaaacaatatgcagctgtgtgcactcacaagatcattttcatgtctctgccttcgttta 10501712  T
Q  94 t---attgttgagactagtgattttgtggctgaagcctttcttctctttgaatgcaagtttcttattcgactg 163  Q
    |   ||| ||| |||||||  ||||||||||||| || |||||||||   |||||| ||| |||||| |||||    
T  10501711 ttgcatt-ttgtgactagtagttttgtggctgaaacccttcttctctccaaatgcaggttccttatttgactg 10501640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 10514025 - 10513880
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    ||||||||||||| ||||||||||||||||||  | ||       |||||||||||| |||| | ||||||||||| |||  ||| ||||||||||||||    
T  10514025 ttttagcttttaccagtttaatgaggcatgaaaaacgattaaaaacaatatgcagtggtgtgcagtcataagatcattttcctgtttctgctttcattta 10513926  T
Q  94 t---attgttgagactagtgattttgtggctgaagcctttcttctct 137  Q
    |   ||| |||| ||| || || |||| |||||||||||||||||||    
T  10513925 ttgcatt-ttgacacttgttatcttgttgctgaagcctttcttctct 10513880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 10539391 - 10539291
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    |||||| | ||||||||||||||||||||||| |||||       |||||||||||| |||| | ||||||||||| ||| |||||||| |||||| |||    
T  10539391 ttttaggtattactagtttaatgaggcatgaaacatgattgaaaacaatatgcagtggtgtgcattcataagatcattttcatgtctcttctttcactta 10539292  T
Q  94 t 94  Q
    |    
T  10539291 t 10539291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 27964092 - 27964018
Alignment:
Q  58 ctcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagccttt 130  Q
    |||||||||||| ||| ||||||||||||||||||||   | | |||||| ||||||||| |||||||||||||||    
T  27964092 ctcataagatcattttcatgtctctgctttcatttattgcact-ttgagattagtgatttcgtggctgaagccttt 27964018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 28107783 - 28107857
Alignment:
Q  58 ctcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagccttt 130  Q
    |||||||||||| ||| ||||||||||||||||||||   | | |||||| ||||||||| |||||||||||||||    
T  28107783 ctcataagatcattttcatgtctctgctttcatttattgcact-ttgagattagtgatttcgtggctgaagccttt 28107857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 10483677 - 10483592
Alignment:
Q  182 tgggggttagtttatagatgttcatcgtgatttgtggatcttgccaataa-attgaatgtctttggagaacttttgtataattgttct 268  Q
    ||||||| ||||| ||||| |||| | |||||||||||||||  || ||| |||||||||  ||||||||||||||||| ||||||||    
T  10483677 tgggggtcagtttttagattttcaccatgatttgtggatctt--cattaatattgaatgttgttggagaacttttgtatgattgttct 10483592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 10502282 - 10502247
Alignment:
Q  100 tgagactagtgattttgtggctgaagcctttcttct 135  Q
    ||||||||||||||| ||||||||||||||||||||    
T  10502282 tgagactagtgatttggtggctgaagcctttcttct 10502247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 10502690 - 10502655
Alignment:
Q  3 ttagcttttactagtttaatgaggcatgaagcatga 38  Q
    |||||||||||||||||||||||||||||| |||||    
T  10502690 ttagcttttactagtttaatgaggcatgaaacatga 10502655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 10513098 - 10513006
Alignment:
Q  40 aatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagccttt 130  Q
    ||||||||||  |||| |||||||||||||  || |||||||||| || ||||||   ||| ||||||||||||||||| ||||||||| ||||    
T  10513098 aatatgcagttgtgtgcactcataagatcatattcatgtctctgcctttatttattgcatt-ttgagactagtgattttttggctgaagacttt 10513006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 7465843 - 7465901
Alignment:
Q  236 aatgtctttggagaacttttgtataattgttcttccttgtctatttaaaatctaatttt 294  Q
    |||||||||||||||||||||||||| |||| | || | ||| |||||| |||||||||    
T  7465843 aatgtctttggagaacttttgtataaatgttttgccatatctttttaaattctaatttt 7465901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 7468734 - 7468788
Alignment:
Q  190 agtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtcttt 244  Q
    ||||| ||||| |||| | ||||||||||||||| ||| ||||||||||||||||    
T  7468734 agtttttagattttcaccatgatttgtggatcttcccattaaattgaatgtcttt 7468788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 10540236 - 10540137
Alignment:
Q  38 acaatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat---attgttgagactagtgattttgtggctgaagcctttcttc 134  Q
    ||||||| ||||| |||| | ||||||||||  ||| || |||||||||||||||||   ||| |||||||||||||  |||||| ||||||| ||||||    
T  10540236 acaatatccagtggtgtgcattcataagatcgttttgatttctctgctttcatttattgcatt-ttgagactagtga--ttgtggttgaagcccttcttc 10540140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10855906 - 10855869
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga 38  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  10855906 ttttagcttttactagtttagtgaggcatgaaacatga 10855869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 10513779 - 10513747
Alignment:
Q  236 aatgtctttggagaacttttgtataattgttct 268  Q
    |||||||||||||||||||||||| ||||||||    
T  10513779 aatgtctttggagaacttttgtatgattgttct 10513747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 10855405 - 10855321
Alignment:
Q  184 ggggttagtttatagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttct 268  Q
    |||||| |||| ||||| |||| | ||||||||| || ||  || ||||| |||||| ||||||||||||||||||  |||||||    
T  10855405 ggggttggtttttagattttcaccatgatttgtgaattttctcattaaatcgaatgtttttggagaacttttgtattgttgttct 10855321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 8670754 - 8670836
Alignment:
Q  242 tttggagaacttttgtataattgttcttccttgtctatttaaaatctaattttggcttttattagtttaataaggcatgaaac 324  Q
    |||||||||| |||||||||||||||| || | ||| |||||| ||||||||| ||||||| | ||||||| |||||||||||    
T  8670754 tttggagaacatttgtataattgttctgccatatctctttaaattctaattttagcttttacttgtttaatgaggcatgaaac 8670836  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 24049948 - 24050048
Alignment:
Q  1 ttttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcattta 93  Q
    ||||||||||||| ||||||||||||||||||  ||||       |||||||||||| |||| ||||||| ||| | ||| |||||||||||||||||||    
T  24049948 ttttagcttttaccagtttaatgaggcatgaaaaatgattgaaaacaatatgcagtggtgtgcactcataggataattttcatgtctctgctttcattta 24050047  T
Q  94 t 94  Q
    |    
T  24050048 t 24050048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 24050245 - 24050382
Alignment:
Q  2 tttagcttttactagtttaatgaggcatgaagcatga-------caatatgcagtgctgtggactcataagatcactttaatgtctctgctttcatttat 94  Q
    |||||||||||||||  |||||||||||||| |||||       | |||||||||| |||| ||||||||||||| ||  || |||||||||||| ||||    
T  24050245 tttagcttttactagcctaatgaggcatgaaacatgattgaaaactatatgcagtggtgtgcactcataagatcatttacatttctctgctttcacttat 24050344  T
Q  95 ---attgttgagactagtgattttgtggctgaagccttt 130  Q
       ||| ||||||||||||||| |||| |||||| ||||    
T  24050345 tgcatt-ttgagactagtgattgtgtgactgaagtcttt 24050382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 18488879 - 18488808
Alignment:
Q  196 tagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttc 267  Q
    ||||| |||||| |||||| | |||||| | | || || ||||||||||||||| |||||||||||||||||    
T  18488879 tagattttcatcatgatttttagatcttcctattagatcgaatgtctttggagagcttttgtataattgttc 18488808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 24050458 - 24050518
Alignment:
Q  209 tgatttgtggatcttgccaataaattg-aatgtctttggagaacttttgtataattgttct 268  Q
    ||||||||||||||| | | |||| || |||||||||||||||||||| |||| |||||||    
T  24050458 tgatttgtggatcttcctattaaactggaatgtctttggagaacttttctatagttgttct 24050518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 17733404 - 17733333
Alignment:
Q  196 tagatgttcatcgtgatttgtggatcttgccaataaattgaatgtctttggagaacttttgtataattgttc 267  Q
    ||||| |||||| |||||| |||||||| | | ||||| ||||||||||||||| ||||||| |||||||||    
T  17733404 tagattttcatcatgatttttggatcttcctattaaatcgaatgtctttggagagcttttgtgtaattgttc 17733333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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