View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15398_low_7 (Length: 331)
Name: NF15398_low_7
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15398_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 53128725 - 53128856
Alignment:
| Q |
1 |
acactttagagatataagtaccgatgttaagattgtgttaaaatacaagaacatatattaagaaaactatgaagatattaaaatctaaaccgctgatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53128725 |
acactttagagatataagtaccgatgttaagattgtgttaaaatacaagaacatatattaagaaaactatgaagatattaaaatctaaaccactgatttt |
53128824 |
T |
|
| Q |
101 |
ccaattcatagttatgaaattataatgccaaa |
132 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |
|
|
| T |
53128825 |
ccaattcatagttatgaacttataatgccaaa |
53128856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 53111315 - 53111452
Alignment:
| Q |
166 |
taagaaataacatatttgactatttaagcaaactaaaacatagtaacatctcaaacctggaaatccagtgacaccgacaatgtcaaatcgcttcacacta |
265 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |||||||||| || |
|
|
| T |
53111315 |
taagaaagaacatatttgactatttaagcaaactaaaactttgtaacatctcaaacctggaaatccagtgacaccagcaatgtcacctcgcttcacatta |
53111414 |
T |
|
| Q |
266 |
gaatgcaattttttaaattcatccacatccaagtcaga |
303 |
Q |
| |
|
||||| |||||| ||||||| || ||| ||||||||| |
|
|
| T |
53111415 |
gaatggaattttccaaattcaacctcattcaagtcaga |
53111452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 53116504 - 53116635
Alignment:
| Q |
181 |
ttgactatttaagcaaactaaaacatagtaacatctcaaacctggaaatccagtgacaccgacaatgtcaaatcgcttcacactagaatgcaatttttta |
280 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||| ||| ||||| ||| | |||| ||||||| ||||| | |
|
|
| T |
53116504 |
ttgaatatttaagcaa-ctaaaacattgtaacatcttaaacctggaaatccaatgacaccaacagtgtcacctcgttccacagtagaatggaatttgcaa |
53116602 |
T |
|
| Q |
281 |
aattcatccacatccaagtcagaactcctgcat |
313 |
Q |
| |
|
|||||| || |||||||||| || |||||||| |
|
|
| T |
53116603 |
aattcaacctcatccaagtcggatatcctgcat |
53116635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 53111138 - 53111237
Alignment:
| Q |
25 |
tgttaagattgtgttaaaatacaagaacatatattaagaaaactatgaagatattaaaatctaaaccgctgattttccaattcatagttatgaaattata |
124 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| || ||||||||||||| ||||||||| |||| ||||||| |||||||||||| | || ||||| |
|
|
| T |
53111138 |
tgtttagattgtgctaaaatacaagcacatata--aaacaaactatgaagatcttaaaatct-aaccattgatttttcaattcatagttttaaacttata |
53111234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University