View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15398_low_9 (Length: 271)

Name: NF15398_low_9
Description: NF15398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15398_low_9
NF15398_low_9
[»] chr5 (3 HSPs)
chr5 (129-263)||(1673780-1673914)
chr5 (17-122)||(1673568-1673671)
chr5 (19-119)||(21122554-21122652)
[»] chr3 (2 HSPs)
chr3 (129-247)||(50057751-50057869)
chr3 (129-244)||(28095565-28095680)
[»] chr8 (4 HSPs)
chr8 (129-249)||(1424570-1424690)
chr8 (178-244)||(10712505-10712571)
chr8 (76-115)||(23098678-23098717)
chr8 (76-115)||(27064348-27064387)
[»] chr7 (3 HSPs)
chr7 (17-116)||(13603938-13604035)
chr7 (130-191)||(29443074-29443130)
chr7 (161-189)||(39363986-39364014)
[»] chr6 (1 HSPs)
chr6 (76-115)||(6717319-6717358)
[»] chr2 (1 HSPs)
chr2 (194-240)||(25475865-25475911)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 1673780 - 1673914
Alignment:
Q  129 gaagcattaaatccaacagaaaattgagacttaccaagtggaagtggagaaagagatgtacctgattatgccaaagacgtacatgttagtttatccaatt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  1673780 gaagcattaaatccaacagaaaattgagacttaccaagtggaagtggagaaagagatgtacttgagtatgccaaagacgtacatgttggtttatccaatt 1673879  T
Q  229 ccttaagaaaagatcttacatacctttttcatttc 263  Q
    ||||||||||||||||||||||||||||| |||||    
T  1673880 ccttaagaaaagatcttacataccttttttatttc 1673914  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 1673568 - 1673671
Alignment:
Q  17 aaacagaatcactttgcatatttgatcatagtaaagtaaaagcaaaaatcacccttttcatttgctagataatctataaaaataaaacaattacagtagc 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1673568 aaacagaatcactt-gcatatttgatcatagtaaagtaaaagcaaaaatcacccttt-catttgctagataatctataaaaataaaacaattacagtagc 1673665  T
Q  117 aaaaca 122  Q
    ||||||    
T  1673666 aaaaca 1673671  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 21122652 - 21122554
Alignment:
Q  19 acagaatcactttgcatatttgatcatagtaaagtaaaagcaaaaatcacccttttcatttgctagataatctataaaaataaaacaattacagtagcaa 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  21122652 acagaatcactt-gcatatttgatcatagtaaagtaaaagcaaaaatcaaccttt-catttgctagataatctataaaaacaaaacaattacagtagcaa 21122555  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 50057869 - 50057751
Alignment:
Q  129 gaagcattaaatccaacagaaaattgagacttaccaagtggaagtggagaaagagatgtacctgattatgccaaagacgtacatgttagtttatccaatt 228  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||| || ||||||| ||||    
T  50057869 gaagcattaaatccaacagaaaattgagacttaccaagtggatgtggagaaagagatgtacctgtgtatgccagagacgtacatcttggtttatctaatt 50057770  T
Q  229 ccttaagaaaagatcttac 247  Q
    |||||||||||||||||||    
T  50057769 ccttaagaaaagatcttac 50057751  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 129 - 244
Target Start/End: Original strand, 28095565 - 28095680
Alignment:
Q  129 gaagcattaaatccaacagaaaattgagacttaccaagtggaagtggagaaagagatgtacctgattatgccaaagacgtacatgttagtttatccaatt 228  Q
    |||||||||||| ||| |||||| ||||||||||||| ||||||| ||||||||||||||| ||  ||||  | |||  |||||||| ||||||||||||    
T  28095565 gaagcattaaattcaagagaaaaatgagacttaccaaatggaagtagagaaagagatgtacatgtgtatgttagagatttacatgttggtttatccaatt 28095664  T
Q  229 ccttaagaaaagatct 244  Q
     ||| |||||||||||    
T  28095665 gcttgagaaaagatct 28095680  T

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Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 1424690 - 1424570
Alignment:
Q  129 gaagcattaaatccaacagaaaattgagacttaccaagtggaagtggagaaagagatgtacctgattatgccaaagacgtacatgttagtttatccaatt 228  Q
    ||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||  ||| || ||||||||||||| ||||||||||||    
T  1424690 gaagcattaaatctaacataaaattaagacttacaaagtggaagtggagaaagagatgtacctgagcatgtcagagacgtacatgttggtttatccaatt 1424591  T
Q  229 ccttaagaaaagatcttacat 249  Q
    |||| ||||||||||||||||    
T  1424590 ccttcagaaaagatcttacat 1424570  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 10712571 - 10712505
Alignment:
Q  178 aaagagatgtacctgattatgccaaagacgtacatgttagtttatccaattccttaagaaaagatct 244  Q
    ||||||||||||||||  |||||| |||||||||| || |||||| |||||||||||||||||||||    
T  10712571 aaagagatgtacctgagcatgccatagacgtacattttggtttattcaattccttaagaaaagatct 10712505  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 23098717 - 23098678
Alignment:
Q  76 atttgctagataatctataaaaataaaacaattacagtag 115  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  23098717 atttgatagataatctataaaactaaaacaattacagtag 23098678  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 27064348 - 27064387
Alignment:
Q  76 atttgctagataatctataaaaataaaacaattacagtag 115  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  27064348 atttgatagataatctataaaactaaaacaattacagtag 27064387  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 13603938 - 13604035
Alignment:
Q  17 aaacagaatcactttgcatatttgatcatagtaaagtaaaagcaaaaatcacccttttcatttgctagataatctataaaaataaaacaattacagtagc 116  Q
    ||||||||||| || ||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  13603938 aaacagaatcaatt-gcacatttgatcatagtaaagcaaaagcaaaaatcaaccttt-catttgctagataatctataaaaataaaacaattacattagc 13604035  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 29443074 - 29443130
Alignment:
Q  130 aagcattaaatccaacagaaaattgagacttaccaagtggaagtggagaaagagatgtacct 191  Q
    |||||||||||||||||||||||||||| || |||     ||||||||||||||||||||||    
T  29443074 aagcattaaatccaacagaaaattgagagtttcca-----aagtggagaaagagatgtacct 29443130  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 39363986 - 39364014
Alignment:
Q  161 accaagtggaagtggagaaagagatgtac 189  Q
    |||||||||||||||||||||||||||||    
T  39363986 accaagtggaagtggagaaagagatgtac 39364014  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 6717358 - 6717319
Alignment:
Q  76 atttgctagataatctataaaaataaaacaattacagtag 115  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  6717358 atttgatagataatctataaaactaaaacaattacagtag 6717319  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 25475865 - 25475911
Alignment:
Q  194 ttatgccaaagacgtacatgttagtttatccaattccttaagaaaag 240  Q
    |||||||| ||| ||||||||| ||||||||||||||| ||||||||    
T  25475865 ttatgccatagatgtacatgttggtttatccaattcctgaagaaaag 25475911  T

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