View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_high_11 (Length: 401)
Name: NF15399_high_11
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 43109562 - 43109182
Alignment:
| Q |
18 |
caatcaaacttagaaaggacatattttgtagagtaattgtgaagattcctaaatataattaatattctatgccaagttcttattccatatcatatcatta |
117 |
Q |
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| T |
43109562 |
caatcaaacttaaaaaggacttattttgtagagtaattgtgaagattcctaaatataattaatattctatgccaagttcttattccatatcatatcatta |
43109463 |
T |
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| Q |
118 |
cagggtctaatcataaatagaatccaagagtctatatcatgtgaagagaataaaaggtttatctatcttggggatggtagtggagattattgtccaagct |
217 |
Q |
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| T |
43109462 |
cagggtctaatcataaatagaatccaagagtctatatcatgtgaagagaataaaaggtttatctatcttggggatggtagtggagattattgtccaagct |
43109363 |
T |
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| Q |
218 |
tgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtgggatttgatttgcaaagatccttcacttgttaaagctaaaatttatga |
317 |
Q |
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| T |
43109362 |
tgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtgggatttaatttgcaaagatccttcacttgttaaagctaaaatttatga |
43109263 |
T |
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| Q |
318 |
atggagtgatggtgaagatcaagaaaggattttgcatcaattaatcaacaaaatatcaatggaagaaactgctcaattcat |
398 |
Q |
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| T |
43109262 |
atggagtgatggtgaagatcaagaaagggttttgcatcaattaatcaacaaaatatcaatggaagaaactgctgaattcat |
43109182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 85 - 398
Target Start/End: Complemental strand, 26314546 - 26314233
Alignment:
| Q |
85 |
tatgccaagttcttattccatatcatatcattacagggtctaatcataaatagaatccaagagtctatatcatgtgaagagaataaaaggtttatctatc |
184 |
Q |
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| T |
26314546 |
tatgccaagttcttattctacatcaaatcattacagggactaatcataaagagaatccaagactctatatcaagtgagaaaaataaaagatttatctatc |
26314447 |
T |
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| Q |
185 |
ttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtgggatttgatttgcaa |
284 |
Q |
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|||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
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| T |
26314446 |
ttggtgatggtagtggagattattgtccaagcttaagccttaaagaaaaagactttgtgatgccaaggaagaattttcctgtatgggacttgatatgcaa |
26314347 |
T |
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| Q |
285 |
agatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaagatcaagaaaggattttgcatcaattaatcaacaaaatatcaatggaagaa |
384 |
Q |
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| T |
26314346 |
agatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaa |
26314247 |
T |
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| Q |
385 |
actgctcaattcat |
398 |
Q |
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| T |
26314246 |
agtgctcaattcat |
26314233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 175 - 335
Target Start/End: Original strand, 5269615 - 5269775
Alignment:
| Q |
175 |
tttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtgggatt |
274 |
Q |
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| T |
5269615 |
tttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtgggatt |
5269714 |
T |
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| Q |
275 |
tgatttgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaaga |
335 |
Q |
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|||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||| ||||| |
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| T |
5269715 |
tgatatgcaaagatccttcacttgttaaggctgaaattcatggttggagtgatggagaaga |
5269775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 172 - 335
Target Start/End: Complemental strand, 5272061 - 5271898
Alignment:
| Q |
172 |
aggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtggg |
271 |
Q |
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||||||||||| ||||| |||||| |||||||||||| || ||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
5272061 |
aggtttatctaccttggtgatggtgctggagattattgccctagcttgaggtttaaagagagagactttgtgatgccaaggaagaattttccagtgtggg |
5271962 |
T |
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| Q |
272 |
atttgatttgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaaga |
335 |
Q |
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||||||| |||||||| |||||||||||||| ||| ||||| ||| ||| ||||||| ||||| |
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| T |
5271961 |
atttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5271898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 172 - 335
Target Start/End: Complemental strand, 5276050 - 5275887
Alignment:
| Q |
172 |
aggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtggg |
271 |
Q |
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||||||||||| ||||| |||||| || || ||||| || || |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5276050 |
aggtttatctaccttggtgatggtgcaggggactattgccctagtttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtggg |
5275951 |
T |
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| Q |
272 |
atttgatttgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaaga |
335 |
Q |
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||||||| |||||||||||||||||||| |||||| ||||| ||| ||||||||||| ||||| |
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| T |
5275950 |
atttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
5275887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 335
Target Start/End: Original strand, 5251759 - 5251931
Alignment:
| Q |
163 |
gagaataaaaggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttc |
262 |
Q |
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||||| || ||||||||||| ||||| ||||| | ||||||||||||||| || || ||||||| ||| ||||| || ||||||||||||||||||||| |
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| T |
5251759 |
gagaacaagaggtttatctaccttggtgatggcattggagattattgtcctagtttaaggcttagagagaaagatttcatgatgccaaggaagaattttc |
5251858 |
T |
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| Q |
263 |
ctgtgtgggatttgatttgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaaga |
335 |
Q |
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| T |
5251859 |
cagtgtgggatttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5251931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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