View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_high_13 (Length: 364)
Name: NF15399_high_13
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 35252917 - 35252606
Alignment:
| Q |
18 |
ccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgc |
117 |
Q |
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| T |
35252917 |
ccatctatatctctgtt-aagtaaatgttacagaggttatacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgc |
35252819 |
T |
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| Q |
118 |
ataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35252818 |
ataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgat |
35252719 |
T |
|
| Q |
218 |
gtattaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35252718 |
gtattaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttcta |
35252619 |
T |
|
| Q |
318 |
gttaatgtctctg |
330 |
Q |
| |
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|| |||||||||| |
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| T |
35252618 |
gtaaatgtctctg |
35252606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 35240664 - 35240354
Alignment:
| Q |
18 |
ccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgc |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35240664 |
ccatctatatctccgtttaagtaaatgttacagaggtta--cagttagactcagtcatagttgaacctattaaaactataaaagtatacgaggtggttgc |
35240567 |
T |
|
| Q |
118 |
ataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||| ||||| |||||||| |||||||||| |
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| T |
35240566 |
ataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgactgttgagaccagggaaatacgtactaaaggagatgcctctgat |
35240467 |
T |
|
| Q |
218 |
gtattaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttcta |
317 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35240466 |
gtattaattactggactagcagctactacagcgcgaagtgaattcgatattgcatcagctagcagtaattctgtggtgaagatatggaaatgaagttcta |
35240367 |
T |
|
| Q |
318 |
gttaatgtctctg |
330 |
Q |
| |
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||||||||||||| |
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| T |
35240366 |
gttaatgtctctg |
35240354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 121 - 330
Target Start/End: Complemental strand, 35246027 - 35245818
Alignment:
| Q |
121 |
aatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgagactgagaaaagacgtaataaaggaggtgcctctgatgta |
220 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| | | ||||| |||||||||| ||||||||||| || |
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| T |
35246027 |
aatattaagtaaataatcttcggacaacttattgcagtgcttggaatggttgattattgagaacgggcaaagatttaataaaggaagtgcctctgatata |
35245928 |
T |
|
| Q |
221 |
ttaattactggactagcagctactacggcgcgaagtgaattcaatattgcatcagctagcagtgattctgtggtgaagatatggaaatgaagttctagtt |
320 |
Q |
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| ||||||||||||||||||| | ||||||| |||||||||| |||||||||| ||||||| ||||||| |||||||| |||||||||||| |||||||| |
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| T |
35245927 |
tcaattactggactagcagcttcaacggcgcaaagtgaattccatattgcatccgctagcactgattctatggtgaagctatggaaatgaaattctagtt |
35245828 |
T |
|
| Q |
321 |
aatgtctctg |
330 |
Q |
| |
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|||||||||| |
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| T |
35245827 |
aatgtctctg |
35245818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 35270105 - 35270037
Alignment:
| Q |
114 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttgaga |
182 |
Q |
| |
|
||||||||| || ||||||||||| |||| |||| ||||| |||||| ||||||||||||||||||||| |
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| T |
35270105 |
ttgcataaagagaaagtaaataatatgtgtacaatttattacagtgcctggaattgttgattcttgaga |
35270037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 35246293 - 35246229
Alignment:
| Q |
18 |
ccatctatatctctgtttaagtaaatgttacagaggttatacagttagactcagtcatagttgaacc |
84 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||| |
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| T |
35246293 |
ccatctatatctccatttaagtaactgttacagaggt--tacacttagactcagtcatagttgaacc |
35246229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 35277159 - 35277094
Alignment:
| Q |
114 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg |
179 |
Q |
| |
|
||||||| || | |||||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
35277159 |
ttgcatagatggaaagtaaataatctgtgtacaatttattgcagggcatggaattgttgactcttg |
35277094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 35285893 - 35285852
Alignment:
| Q |
288 |
ctgtggtgaagatatggaaatgaagttctagttaatgtctct |
329 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||| |
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| T |
35285893 |
ctgtggtgaacatatggaaatgaagttctagttgatgtctct |
35285852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 35269958 - 35269914
Alignment:
| Q |
270 |
catcagctagcagtgattctgtggtgaagatatggaaatgaagtt |
314 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
35269958 |
catcagctagcgatgattctgtggtgaagatatggagatgaagtt |
35269914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 35274873 - 35274830
Alignment:
| Q |
139 |
tgtggacaacttattgcagtgcttggaattgttgattcttgaga |
182 |
Q |
| |
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|||| |||| |||||||||||||||||| ||||||||||||||| |
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| T |
35274873 |
tgtgtacaatttattgcagtgcttggaaatgttgattcttgaga |
35274830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 35282746 - 35282681
Alignment:
| Q |
114 |
ttgcataaatagtaagtaaataatctgtggacaacttattgcagtgcttggaattgttgattcttg |
179 |
Q |
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|||||||||| | ||| || ||||||||| |||| |||||||||||| ||||||||| || ||||| |
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| T |
35282746 |
ttgcataaatggaaagcaactaatctgtgtacaatttattgcagtgcatggaattgtggactcttg |
35282681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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