View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_high_14 (Length: 351)
Name: NF15399_high_14
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 74 - 336
Target Start/End: Original strand, 22042567 - 22042830
Alignment:
| Q |
74 |
aagtttaacaacagtgcagagtagtataacaa-attaaaatcagcagttaggaaagctgaaaatatagaatacctgatatggaagatgtacagtttcaaa |
172 |
Q |
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| T |
22042567 |
aagtataacaacagtgcagagtagtataacaacagtgcag--agcagttaggaaagctgaaaatatagaatacctgatatggaagatgtacagtttcaaa |
22042664 |
T |
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| Q |
173 |
acctcccaaaacttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgtgaaagatgatgtagttatattttttattgtgaacat |
272 |
Q |
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|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
22042665 |
acctcctagaatttgtcttttaagtacaacacgatatccagccatttgaagtggaaagagttgttaaagatgatgtagttatattttttattgtgaagat |
22042764 |
T |
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| Q |
273 |
tcaattatgtcaatatatggtttatatagaaag--atatatggagagaaaacccaagttgcatatg |
336 |
Q |
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|||| ||||||| | |||| ||||||| |||| |||||||||||||||| |||||||||||||| |
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| T |
22042765 |
gcaataatgtcaagagatgggttatatataaagatatatatggagagaaaagccaagttgcatatg |
22042830 |
T |
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