View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_high_16 (Length: 292)
Name: NF15399_high_16
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_16 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 16231045 - 16231328
Alignment:
| Q |
9 |
agtgagatgaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgtaagttcaatcattttgaat |
108 |
Q |
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| T |
16231045 |
agtgaaatgaacaatcatgtggaggttgatacatttggacagattttcacgactgaaacagttccctctaaaggcttatgtaagttcaatcattttgaat |
16231144 |
T |
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| Q |
109 |
ataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattccatatatagaaaaataattaatgttcaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
16231145 |
ataaagtctcacatgaatttcaatcaacagtaaagaatttaaattaaagattgttaatagcactagtcattccatatatagaaaaataatgaacgttcaa |
16231244 |
T |
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| Q |
209 |
tcattttgactacgaagtctcaagtaacagaagacattacatttttgcgatgaagaagcccatcatcaccaataactagacctg |
292 |
Q |
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| T |
16231245 |
tcattttgattacgaagtctcaagtaacagaagacattacatttttgcgatgaagaagcccatcatcgccaataactagacctg |
16231328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 34688805 - 34688961
Alignment:
| Q |
9 |
agtgagatgaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgtaagttcaatcattttgaat |
108 |
Q |
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| T |
34688805 |
agtgagatgaacaataatgtggaggttgatacatttggacagactttcaggattgaaacagttccctgtaaa-----------------tcattttgaat |
34688887 |
T |
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| Q |
109 |
ataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
182 |
Q |
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| T |
34688888 |
ataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34688961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 182
Target Start/End: Original strand, 34711217 - 34711373
Alignment:
| Q |
9 |
agtgagatgaacaatcatgaggaggttgatacatttggacagattttcaggactgaaacagttccctctaaaggcttatgtaagttcaatcattttgaat |
108 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||| |
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| T |
34711217 |
agtgagatgaacaataatgtggaggttgatacatttggacagactttcaggattgaaacagttccctgtaaa-----------------tcattttgaat |
34711299 |
T |
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| Q |
109 |
ataaagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtcattcca |
182 |
Q |
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| T |
34711300 |
ataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcactagtcattcca |
34711373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 35925343 - 35925285
Alignment:
| Q |
112 |
aagtctcacatgaatttcaatcaacagtaaagaatttaaagtaaagattgttaatagca |
170 |
Q |
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| T |
35925343 |
aagtctcacaagaatttcagtcaatagtaaagaattcaaaataaagattgttaatagca |
35925285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 34689781 - 34689833
Alignment:
| Q |
124 |
aatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtc |
176 |
Q |
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| T |
34689781 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34689833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 34712193 - 34712245
Alignment:
| Q |
124 |
aatttcaatcaacagtaaagaatttaaagtaaagattgttaatagcactagtc |
176 |
Q |
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| T |
34712193 |
aatttcagtcaatagtaaaaagtctaaagttaagattgttaatagcactagtc |
34712245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 4384183 - 4384237
Alignment:
| Q |
32 |
ggttgatacatttggacagattttcaggactgaaacagttccctctaaaggctta |
86 |
Q |
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| T |
4384183 |
ggttaatatatttggacagacttccaggactgaaacatttccgtctaaaggctta |
4384237 |
T |
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