View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15399_high_18 (Length: 269)

Name: NF15399_high_18
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15399_high_18
NF15399_high_18
[»] chr8 (11 HSPs)
chr8 (1-250)||(30648703-30648952)
chr8 (137-243)||(26089181-26089287)
chr8 (106-245)||(27714265-27714404)
chr8 (140-245)||(14727714-14727819)
chr8 (140-245)||(29552745-29552850)
chr8 (139-245)||(15329808-15329914)
chr8 (139-245)||(15510177-15510283)
chr8 (136-245)||(28693188-28693298)
chr8 (131-228)||(24509272-24509369)
chr8 (1-46)||(14727566-14727611)
chr8 (1-46)||(26089066-26089111)
[»] chr7 (2 HSPs)
chr7 (136-243)||(6610910-6611017)
chr7 (141-199)||(17292704-17292762)
[»] chr3 (2 HSPs)
chr3 (131-245)||(4819858-4819972)
chr3 (1-42)||(4819728-4819769)
[»] chr1 (1 HSPs)
chr1 (136-245)||(26086439-26086548)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 30648703 - 30648952
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgattatccatcatttgatcatagaataagatcaaagatcacaattataggtgctctg 100  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||| ||    
T  30648703 tatattattaagtgttggaacaaaacctagctcagaagtcactgattatcccacatgtgatcatagaataagatcaaagatcacaactataggtgctgtg 30648802  T
Q  101 ggaatttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcag 200  Q
      |||||||||| ||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648803 acaatttatataaatcgcattagaggagatatatcagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcag 30648902  T
Q  201 gattgagtccccctggtggaatttatcaggttagtgctggtgacactaac 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648903 gattgagtccccctggtggaatttatcaggttagtgctggtgacactaac 30648952  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 26089181 - 26089287
Alignment:
Q  137 gaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtg 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  26089181 gaggagcaacgtaacagttggttgatagttgcgactcttgttgcaactgcgatttatcaatcaggattgagtccccctagtggaatttatcaggttagtg 26089280  T
Q  237 ctggtga 243  Q
    || ||||    
T  26089281 ctagtga 26089287  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 27714265 - 27714404
Alignment:
Q  106 ttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattg 205  Q
    ||||||| ||||||||| ||  ||  |||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||| |||||||||| ||||    
T  27714265 ttatataaatcgcattagaaatgatgtattagaggagcaacgcaacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattg 27714364  T
Q  206 agtccccctggtggaatttatcaggttagtgctggtgaca 245  Q
    | ||||  ||||||| |||||||||||| |||| ||||||    
T  27714365 actcccgttggtggagtttatcaggttaatgctagtgaca 27714404  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 14727714 - 14727819
Alignment:
Q  140 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctg 239  Q
    |||||||| |||| |||||||||||| || |||||| |||| |||||||| || |||||||  |||||||||||||||||| |||||||| |||||||||    
T  14727714 gagcaacgcaacatttggttgatagtcgccactcttattgcaactgccatgtaccaatcagttttgagtccccctggtggagtttatcagattagtgctg 14727813  T
Q  240 gtgaca 245  Q
    ||||||    
T  14727814 gtgaca 14727819  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 29552745 - 29552850
Alignment:
Q  140 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctg 239  Q
    |||||||||||||||  ||||||||||||  | ||||||| |||||||| ||||||||||| | | ||||||||||||||| |||||||||||| ||||     
T  29552745 gagcaacgtaacactatgttgatagttgcagcccttgttgtgactgccacctatcaatcagtactaagtccccctggtggagtttatcaggttaatgcta 29552844  T
Q  240 gtgaca 245  Q
    ||||||    
T  29552845 gtgaca 29552850  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 15329808 - 15329914
Alignment:
Q  139 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgct 238  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| ||||||||    
T  15329808 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15329907  T
Q  239 ggtgaca 245  Q
    | |||||    
T  15329908 gatgaca 15329914  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 15510177 - 15510283
Alignment:
Q  139 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgct 238  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| ||||||||    
T  15510177 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15510276  T
Q  239 ggtgaca 245  Q
    | |||||    
T  15510277 gatgaca 15510283  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 28693298 - 28693188
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcag-gttag 234  Q
    |||||| ||||| |||| |||||| ||||| ||||||||| |||| ||| |||| | | ||||||   |||  |||||||||||||||||||||  ||||    
T  28693298 agaggatcaacgcaacatttggttaatagtcgcgactcttattgcaactaccatgtttgaatcagctctgacaccccctggtggaatttatcagatttag 28693199  T
Q  235 tgctggtgaca 245  Q
    |||||||||||    
T  28693198 tgctggtgaca 28693188  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 24509272 - 24509369
Alignment:
Q  131 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatca 228  Q
    ||||||||||||||||| | |||||||||||| |||||||| || ||||| || || | ||||||| ||| | | | ||||||||| ||| |||||||    
T  24509272 atattagaggagcaacgcagcacttggttgattgttgcgaccctcgttgcaacagcgacctatcaaacagtactaaatccccctggcggattttatca 24509369  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14727566 - 14727611
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgat 46  Q
    |||||||||||||||||||||||||| |||| | |||||| |||||    
T  14727566 tatattattaagtgttggagcaaaacatagcatagaagtcgctgat 14727611  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26089066 - 26089111
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgat 46  Q
    ||||||||||||| ||||||||||||||||| | ||| ||||||||    
T  26089066 tatattattaagttttggagcaaaacctagcatagaaatcactgat 26089111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 6611017 - 6610910
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 235  Q
    ||||||| | |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6611017 agaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtcctcctggtggaatttatcaggttagt 6610918  T
Q  236 gctggtga 243  Q
    | ||||||    
T  6610917 gttggtga 6610910  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 17292762 - 17292704
Alignment:
Q  141 agcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatca 199  Q
    ||||||| ||||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  17292762 agcaacgcaacacttggttgataattgcgactcttgttgcaacagccacctatcaatca 17292704  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 4819858 - 4819972
Alignment:
Q  131 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcagg 230  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||| | ||  ||| || |||||| |||||||||    
T  4819858 atatcagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcagg 4819957  T
Q  231 ttagtgctggtgaca 245  Q
    ||| |||| ||||||    
T  4819958 ttaatgctagtgaca 4819972  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4819728 - 4819769
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcac 42  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  4819728 tatattatcaagtgttggagcaaaacctggcttggaagtcac 4819769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 26086548 - 26086439
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 235  Q
    |||||||||||| |||| |||||| ||||| ||  ||||| |||||||| |||| ||| ||||||   ||| ||||||||||||| |||||| |  ||||    
T  26086548 agaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccgagtagt 26086449  T
Q  236 gctggtgaca 245  Q
    || |||||||    
T  26086448 gccggtgaca 26086439  T

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