View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_high_19 (Length: 250)
Name: NF15399_high_19
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 1477099 - 1476860
Alignment:
| Q |
11 |
caaagggttttggtaagtgagaatttaacaaattggttctcaagtggattcacggttcaaactccatacgaattccattggtataagtgggacgaattca |
110 |
Q |
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| T |
1477099 |
caaagggttttggtaagtgagaatttaacaaattggtactcaagtggattcacaattcaaactccatacgaattccattggtataagtgggacgaattca |
1477000 |
T |
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| Q |
111 |
ggtatgttgctcttcctttttccattctaaaatattgagatttttgtttgtgggacttagaattatcttacacgaagtaggtctaactgaaggttggtcg |
210 |
Q |
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| T |
1476999 |
ggtatgttgctcttcccttttccattctaaaatattgaaatttgtgtttgtgggacttagaattatcttacacgaagtaggtctaaccgaaggttggtcg |
1476900 |
T |
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| Q |
211 |
ttaacttatggttagattgactgcatggactagagaatct |
250 |
Q |
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| T |
1476899 |
ttgacttatggttagattgactgcatggactagagaatct |
1476860 |
T |
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