View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_high_4 (Length: 499)
Name: NF15399_high_4
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_4 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 32 - 482
Target Start/End: Original strand, 6496923 - 6497374
Alignment:
| Q |
32 |
taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtat-ttacatgaatatgactgaaattaatccaacaact |
130 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6496923 |
taatactcaattgatgactatatctttatgtgttacatacatgaagatgaaacatgctcatgtatattacatgaatatgactgaaattaatccaacaact |
6497022 |
T |
|
| Q |
131 |
accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6497023 |
accgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatg |
6497122 |
T |
|
| Q |
231 |
aaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaaca |
330 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6497123 |
aaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattctcttgaaca |
6497222 |
T |
|
| Q |
331 |
caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcc |
430 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6497223 |
caaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcc |
6497322 |
T |
|
| Q |
431 |
tccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatat |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6497323 |
tccatgcctgcacaaatttgtccaaacgcaaataaaatactaggttagatat |
6497374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 222 - 464
Target Start/End: Original strand, 6510100 - 6510342
Alignment:
| Q |
222 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510100 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
6510199 |
T |
|
| Q |
322 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
421 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| || | |||||||||| |||||||||| || || |
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| T |
6510200 |
tcttgaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgataattgttgcagtaccatcaa |
6510299 |
T |
|
| Q |
422 |
tccaattcctccatgcctgcacaaatttgtccaaacgcaaata |
464 |
Q |
| |
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||||||| |||||||||||||||||||| ||||| ||||||| |
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|
| T |
6510300 |
tccaatttctccatgcctgcacaaatttacccaaatgcaaata |
6510342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 133 - 448
Target Start/End: Original strand, 6514384 - 6514690
Alignment:
| Q |
133 |
cgaggatacagctctgtatttgaagacccattgactgattcttgagctgaactatgaccccatgatttcatatcttgaaggtttctgctatccatatgaa |
232 |
Q |
| |
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|||||| | |||| ||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||| | | ||||||| |
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| T |
6514384 |
cgaggaaatagctgtgtatttgaagccccattgactgattcttgagcagaactatgacctgacgatttcatatcttgaggccct---------atatgaa |
6514474 |
T |
|
| Q |
233 |
atgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacaca |
332 |
Q |
| |
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||||||||| |||||| |||||||||||||| ||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
6514475 |
atgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaacaca |
6514574 |
T |
|
| Q |
333 |
aagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctc |
432 |
Q |
| |
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||||||||||||||| |||||||||| || |||||| |||| ||||||||||| || |||||||||||| ||| |||||| |||||||||||||| ||| |
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| T |
6514575 |
aagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttccaatttctc |
6514674 |
T |
|
| Q |
433 |
catgcctgcacaaatt |
448 |
Q |
| |
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||||||| |||||||| |
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| T |
6514675 |
catgcctacacaaatt |
6514690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 244 - 454
Target Start/End: Original strand, 6502468 - 6502678
Alignment:
| Q |
244 |
aaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaa |
343 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||||||||||| |||||||||| |||| || | ||| |||||||||||||||||||||||||| |
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| T |
6502468 |
aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaa |
6502567 |
T |
|
| Q |
344 |
tatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctccttccaattcctccatgcctgcac |
443 |
Q |
| |
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|||| |||||||| | |||||||||||||||||||||||||| || | ||||||||| |||||||||| ||||| ||||||| |||||||||| ||| |
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| T |
6502568 |
tatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacac |
6502667 |
T |
|
| Q |
444 |
aaatttgtcca |
454 |
Q |
| |
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|||||| |||| |
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| T |
6502668 |
aaatttatcca |
6502678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 265 - 398
Target Start/End: Complemental strand, 6526001 - 6525868
Alignment:
| Q |
265 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
364 |
Q |
| |
|
|||| |||||||||||| | ||||| ||||||||| |||||||||||||| |||| ||||||||||||||||| ||||| || || ||||||| |||| |
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|
| T |
6526001 |
gaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattattt |
6525902 |
T |
|
| Q |
365 |
catttcgtgaatcattgtttaacgtgggatctat |
398 |
Q |
| |
|
| || ||||||||||||||| ||||||||||| |
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|
| T |
6525901 |
cgttcactgaatcattgtttaatgtgggatctat |
6525868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 47771647 - 47771526
Alignment:
| Q |
265 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
364 |
Q |
| |
|
|||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| |||||||| || ||||||| |||| |
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|
| T |
47771647 |
gaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattattt |
47771548 |
T |
|
| Q |
365 |
catttcgtgaatcattgtttaa |
386 |
Q |
| |
|
||||| |||| ||||||||| |
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|
| T |
47771547 |
catttgctgaaatattgtttaa |
47771526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 47775799 - 47775678
Alignment:
| Q |
265 |
gaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacattt |
364 |
Q |
| |
|
|||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| ||||||| |||||||||| |||| |
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|
| T |
47775799 |
gaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattattt |
47775700 |
T |
|
| Q |
365 |
catttcgtgaatcattgtttaa |
386 |
Q |
| |
|
||||| |||| ||||||||| |
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|
| T |
47775699 |
catttgctgaaatattgtttaa |
47775678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 447
Target Start/End: Original strand, 47710892 - 47711017
Alignment:
| Q |
322 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
421 |
Q |
| |
|
||||||||||| ||||| |||| || || ||||||| ||||||||| ||||| ||||| |||| | |||||||| ||| |||| || |||||| |
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|
| T |
47710892 |
tcttgaacacatagtaaagcaatgtgaatgcatctcattatttcattttgtgaaccattgcttaatgatggatctattatatttgtgattgtaccctccc |
47710991 |
T |
|
| Q |
422 |
tccaattcctccatgcctgcacaaat |
447 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
47710992 |
tccaactcctccatgcctgcacaaat |
47711017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 222 - 464
Target Start/End: Original strand, 11780 - 12022
Alignment:
| Q |
222 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11780 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
11879 |
T |
|
| Q |
322 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
421 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| || | ||||||||| |||||||||| || |||| |
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|
| T |
11880 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccttcct |
11979 |
T |
|
| Q |
422 |
tccaattcctccatgcctgcacaaatttgtccaaacgcaaata |
464 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
11980 |
tccaatttctccatgcctgcacaaatttacccaaatgcaaata |
12022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 222 - 454
Target Start/End: Original strand, 4124 - 4356
Alignment:
| Q |
222 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4124 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
4223 |
T |
|
| Q |
322 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
421 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| || | ||||||||| |||||||||| ||||| |
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|
| T |
4224 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctc |
4323 |
T |
|
| Q |
422 |
tccaattcctccatgcctgcacaaatttgtcca |
454 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||| |
|
|
| T |
4324 |
tccaatttctccatgcctacacaaatttatcca |
4356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
| Q |
310 |
ctagctacattctcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaa |
375 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || ||||||| |||||||||| |||| |
|
|
| T |
28843804 |
ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa |
28843869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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