View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15399_high_8 (Length: 447)
Name: NF15399_high_8
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_8 |
 |  |
|
| [»] scaffold1339 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 31964890 - 31964966
Alignment:
| Q |
197 |
tatcaaataaaattgtttacaaaattataacgctataacccctgaaacttagtaatttattgtaagcttaaatcccattaa |
277 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| || ||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31964890 |
tatcaaatataattgtttacaaa-ttataacactgtaaccccggaaacttagt---ttattgtaagcttaaatcccattaa |
31964966 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 36132672 - 36132724
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
36132672 |
gaggtattcttctatagtcacaagactaaattaatagtatttggatacacaca |
36132724 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 42056673 - 42056720
Alignment:
| Q |
371 |
accgaggtattcttctatggtcacaagaccaaatcaatagggtttgga |
418 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
42056673 |
accgagatattcttccatggtcacaagaccaaatcaataatgtttgga |
42056720 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 16782495 - 16782442
Alignment:
| Q |
378 |
tattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||| | |||||||||| |
|
|
| T |
16782495 |
tattcttttatggtcacaagaccaaataaatagtctttggacatacacacataa |
16782442 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 30208195 - 30208252
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| ||||||| ||| | |||||| |
|
|
| T |
30208195 |
gaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataa |
30208252 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 7080149 - 7080206
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
7080149 |
gaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataa |
7080206 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 25337028 - 25336970
Alignment:
| Q |
373 |
cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||| ||||||| || ||||||||| |
|
|
| T |
25337028 |
cgaggtattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataa |
25336970 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 994915 - 994871
Alignment:
| Q |
387 |
atggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
994915 |
atggtcacaagaccaaataaatagtgtttggtcacacacacataa |
994871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 6512195 - 6512138
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
6512195 |
gaggtattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataa |
6512138 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 30706266 - 30706213
Alignment:
| Q |
371 |
accgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca |
424 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
30706266 |
accgaggcattcttacatggtcacaagaccaaatcaatagtgtttggacacaca |
30706213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 3870020 - 3870072
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| || ||||||| |
|
|
| T |
3870020 |
gaggtattcttccatggtcacaagaccaaatcaataatgttttgacacacaca |
3870072 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 28734181 - 28734129
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
28734181 |
gaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacaca |
28734129 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 37721445 - 37721480
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaata |
409 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37721445 |
gaggtattcttccatggtcacaagaccaaatcaata |
37721480 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 11028774 - 11028827
Alignment:
| Q |
373 |
cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
11028774 |
cgaggtattcttccatcgtcaaaagaccaaatcaataatgtttggacacacaca |
11028827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 36400857 - 36400910
Alignment:
| Q |
378 |
tattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
36400857 |
tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataa |
36400910 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 3647413 - 3647449
Alignment:
| Q |
373 |
cgaggtattcttctatggtcacaagaccaaatcaata |
409 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3647413 |
cgaggtattcttccttggtcacaagaccaaatcaata |
3647449 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 38879513 - 38879565
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
38879513 |
gaggtattcttccatagtcacaagaccaaattaataatgtttggacacacaca |
38879565 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 424
Target Start/End: Complemental strand, 15878843 - 15878797
Alignment:
| Q |
378 |
tattcttctatggtcacaagaccaaatcaatagggtttggatacaca |
424 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15878843 |
tattcttctattgtcacaagaccaaatcaatagcgtttggatacaca |
15878797 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 34998524 - 34998581
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
34998524 |
gaggtattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataa |
34998581 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 45627527 - 45627471
Alignment:
| Q |
375 |
aggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| |||| || |||||||||||| |
|
|
| T |
45627527 |
aggtattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataa |
45627471 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 32676804 - 32676841
Alignment:
| Q |
387 |
atggtcacaagaccaaatcaatagggtttggatacaca |
424 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32676804 |
atggtcacaagaccaaatcaatagtgtttggatacaca |
32676841 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 46023139 - 46023181
Alignment:
| Q |
389 |
ggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
46023139 |
ggtcacaagaccaaatcaatattgtttggacacacacacataa |
46023181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 39188068 - 39188020
Alignment:
| Q |
375 |
aggtattcttctatggtcacaagaccaaatcaatagggtttggatacac |
423 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| |||||| |||| |
|
|
| T |
39188068 |
aggtattcttccatggtcagaagaccaaatcaatagtatttggacacac |
39188020 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 17056614 - 17056668
Alignment:
| Q |
377 |
gtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
17056614 |
gtattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataa |
17056668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 39503616 - 39503562
Alignment:
| Q |
377 |
gtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| | ||| |||||||| |
|
|
| T |
39503616 |
gtattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataa |
39503562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 20679955 - 20679898
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
20679955 |
gaggtattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataa |
20679898 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 409
Target Start/End: Complemental strand, 52920200 - 52920166
Alignment:
| Q |
375 |
aggtattcttctatggtcacaagaccaaatcaata |
409 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52920200 |
aggtattcttccatggtcacaagaccaaatcaata |
52920166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 39744280 - 39744230
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
39744280 |
gaggtattcttctatggtcacaagaccaaatcaataatgtttggacacaca |
39744230 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 21356789 - 21356840
Alignment:
| Q |
373 |
cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca |
424 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
21356789 |
cgaggtattcttttatggtcacaagaccaaatcaataatgtttggacacaca |
21356840 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 2344964 - 2345022
Alignment:
| Q |
373 |
cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
2344964 |
cgaggtattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataa |
2345022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 41725488 - 41725541
Alignment:
| Q |
378 |
tattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||||| |||||| |
|
|
| T |
41725488 |
tattcttctatggtcacaagaccaaataaatagtatttggacacacaaacataa |
41725541 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 24241474 - 24241526
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
24241474 |
gaggtattcttccatggtcacatgaccaaatcaataatgtttggacacacaca |
24241526 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 16253026 - 16253077
Alignment:
| Q |
375 |
aggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
16253026 |
aggtattcttccatgttcacaagaccaaatcaataatgtttggagacacaca |
16253077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1339 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1339
Description:
Target: scaffold1339; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 169 - 112
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
169 |
gaggtattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataa |
112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 47169243 - 47169299
Alignment:
| Q |
375 |
aggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
47169243 |
aggtattcttttatagtcataagaccaaatcaatagtgtttggacacacacacataa |
47169299 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 1994962 - 1994907
Alignment:
| Q |
373 |
cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacaca |
428 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
1994962 |
cgagatattctactatggtcacaagaccaaatcaataatgtttggacaaacacaca |
1994907 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 2976555 - 2976505
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca |
424 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
2976555 |
gaggtattcttccatggtcataagaccaaatcaatagtgtttggacacaca |
2976505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 8026463 - 8026520
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa |
431 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
8026463 |
gaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataa |
8026520 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 10719742 - 10719794
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||| ||||||| ||||||| |
|
|
| T |
10719742 |
gaggtattcttccatggtcataagaccaaattaatagtgtttggacacacaca |
10719794 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 33758790 - 33758842
Alignment:
| Q |
374 |
gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca |
426 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
33758790 |
gaggtattcttccatggtcacaagatcaaatcaatactgtttggacacacaca |
33758842 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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