View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15399_high_8 (Length: 447)

Name: NF15399_high_8
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15399_high_8
NF15399_high_8
[»] chr8 (5 HSPs)
chr8 (197-277)||(31964890-31964966)
chr8 (374-426)||(36132672-36132724)
chr8 (371-418)||(42056673-42056720)
chr8 (378-431)||(16782442-16782495)
chr8 (374-431)||(30208195-30208252)
[»] chr6 (3 HSPs)
chr6 (374-431)||(7080149-7080206)
chr6 (373-431)||(25336970-25337028)
chr6 (387-431)||(994871-994915)
[»] chr2 (9 HSPs)
chr2 (374-431)||(6512138-6512195)
chr2 (371-424)||(30706213-30706266)
chr2 (374-426)||(3870020-3870072)
chr2 (374-426)||(28734129-28734181)
chr2 (374-409)||(37721445-37721480)
chr2 (373-426)||(11028774-11028827)
chr2 (378-431)||(36400857-36400910)
chr2 (373-409)||(3647413-3647449)
chr2 (374-426)||(38879513-38879565)
[»] chr7 (6 HSPs)
chr7 (378-424)||(15878797-15878843)
chr7 (374-431)||(34998524-34998581)
chr7 (375-431)||(45627471-45627527)
chr7 (387-424)||(32676804-32676841)
chr7 (389-431)||(46023139-46023181)
chr7 (375-423)||(39188020-39188068)
[»] chr4 (4 HSPs)
chr4 (377-431)||(17056614-17056668)
chr4 (377-431)||(39503562-39503616)
chr4 (374-431)||(20679898-20679955)
chr4 (375-409)||(52920166-52920200)
[»] chr1 (6 HSPs)
chr1 (374-424)||(39744230-39744280)
chr1 (373-424)||(21356789-21356840)
chr1 (373-431)||(2344964-2345022)
chr1 (378-431)||(41725488-41725541)
chr1 (374-426)||(24241474-24241526)
chr1 (375-426)||(16253026-16253077)
[»] scaffold1339 (1 HSPs)
scaffold1339 (374-431)||(112-169)
[»] chr3 (2 HSPs)
chr3 (375-431)||(47169243-47169299)
chr3 (373-428)||(1994907-1994962)
[»] chr5 (4 HSPs)
chr5 (374-424)||(2976505-2976555)
chr5 (374-431)||(8026463-8026520)
chr5 (374-426)||(10719742-10719794)
chr5 (374-426)||(33758790-33758842)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 31964890 - 31964966
Alignment:
197 tatcaaataaaattgtttacaaaattataacgctataacccctgaaacttagtaatttattgtaagcttaaatcccattaa 277  Q
    ||||||||| ||||||||||||| ||||||| || ||||||| ||||||||||   |||||||||||||||||||||||||    
31964890 tatcaaatataattgtttacaaa-ttataacactgtaaccccggaaacttagt---ttattgtaagcttaaatcccattaa 31964966  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 36132672 - 36132724
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    ||||||||||||||| |||||||||| |||| |||||  ||||||||||||||    
36132672 gaggtattcttctatagtcacaagactaaattaatagtatttggatacacaca 36132724  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 42056673 - 42056720
Alignment:
371 accgaggtattcttctatggtcacaagaccaaatcaatagggtttgga 418  Q
    |||||| |||||||| |||||||||||||||||||||||  |||||||    
42056673 accgagatattcttccatggtcacaagaccaaatcaataatgtttgga 42056720  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 16782495 - 16782442
Alignment:
378 tattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    ||||||| ||||||||||||||||||| |||||  |||||| | ||||||||||    
16782495 tattcttttatggtcacaagaccaaataaatagtctttggacatacacacataa 16782442  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 30208195 - 30208252
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||| ||||||| |||||||||||||||  ||||||| ||| | ||||||    
30208195 gaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataa 30208252  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 7080149 - 7080206
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||||||||||||| |||||||||||||  ||||||| ||||||||||||    
7080149 gaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataa 7080206  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 431
Target Start/End: Complemental strand, 25337028 - 25336970
Alignment:
373 cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||||  ||||||||||| ||||||||||  ||||||| || |||||||||    
25337028 cgaggtattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataa 25336970  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 994915 - 994871
Alignment:
387 atggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||||||||| ||||| ||||||  ||||||||||||    
994915 atggtcacaagaccaaataaatagtgtttggtcacacacacataa 994871  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 6512195 - 6512138
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||    
6512195 gaggtattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataa 6512138  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 30706266 - 30706213
Alignment:
371 accgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca 424  Q
    ||||||| ||||||  |||||||||||||||||||||||| ||||||| |||||    
30706266 accgaggcattcttacatggtcacaagaccaaatcaatagtgtttggacacaca 30706213  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 3870020 - 3870072
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    |||||||||||| |||||||||||||||||||||||  |||| || |||||||    
3870020 gaggtattcttccatggtcacaagaccaaatcaataatgttttgacacacaca 3870072  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 28734181 - 28734129
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    |||||||||||| | |||||||||||||||||||||  ||||||| |||||||    
28734181 gaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacaca 28734129  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 37721445 - 37721480
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaata 409  Q
    |||||||||||| |||||||||||||||||||||||    
37721445 gaggtattcttccatggtcacaagaccaaatcaata 37721480  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 11028774 - 11028827
Alignment:
373 cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    ||||||||||||| || |||| |||||||||||||||  ||||||| |||||||    
11028774 cgaggtattcttccatcgtcaaaagaccaaatcaataatgtttggacacacaca 11028827  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 36400857 - 36400910
Alignment:
378 tattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||| |||||| ||||||||||||||||  ||||| | ||||||||||||    
36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataa 36400910  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 3647413 - 3647449
Alignment:
373 cgaggtattcttctatggtcacaagaccaaatcaata 409  Q
    |||||||||||||  ||||||||||||||||||||||    
3647413 cgaggtattcttccttggtcacaagaccaaatcaata 3647449  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 38879513 - 38879565
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    |||||||||||| || ||||||||||||||| ||||  ||||||| |||||||    
38879513 gaggtattcttccatagtcacaagaccaaattaataatgtttggacacacaca 38879565  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 424
Target Start/End: Complemental strand, 15878843 - 15878797
Alignment:
378 tattcttctatggtcacaagaccaaatcaatagggtttggatacaca 424  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||    
15878843 tattcttctattgtcacaagaccaaatcaatagcgtttggatacaca 15878797  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 34998524 - 34998581
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||| |||||||||||||||||||||||  ||||||| ||||||| ||||    
34998524 gaggtattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataa 34998581  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 45627527 - 45627471
Alignment:
375 aggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    ||||||||||| ||||||||| |||||||||||||| |||| || ||||||||||||    
45627527 aggtattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataa 45627471  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 32676804 - 32676841
Alignment:
387 atggtcacaagaccaaatcaatagggtttggatacaca 424  Q
    |||||||||||||||||||||||| |||||||||||||    
32676804 atggtcacaagaccaaatcaatagtgtttggatacaca 32676841  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 46023139 - 46023181
Alignment:
389 ggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||||||||||||  ||||||| ||||||||||||    
46023139 ggtcacaagaccaaatcaatattgtttggacacacacacataa 46023181  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 39188068 - 39188020
Alignment:
375 aggtattcttctatggtcacaagaccaaatcaatagggtttggatacac 423  Q
    ||||||||||| ||||||| ||||||||||||||||  |||||| ||||    
39188068 aggtattcttccatggtcagaagaccaaatcaatagtatttggacacac 39188020  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 17056614 - 17056668
Alignment:
377 gtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||    
17056614 gtattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataa 17056668  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 39503616 - 39503562
Alignment:
377 gtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||| ||||||||    
39503616 gtattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataa 39503562  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 20679955 - 20679898
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||  |||||| ||||| ||||||||||| ||||||| ||||||||||||    
20679955 gaggtattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataa 20679898  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 409
Target Start/End: Complemental strand, 52920200 - 52920166
Alignment:
375 aggtattcttctatggtcacaagaccaaatcaata 409  Q
    ||||||||||| |||||||||||||||||||||||    
52920200 aggtattcttccatggtcacaagaccaaatcaata 52920166  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 39744280 - 39744230
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca 424  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| |||||    
39744280 gaggtattcttctatggtcacaagaccaaatcaataatgtttggacacaca 39744230  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 21356789 - 21356840
Alignment:
373 cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca 424  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||| |||||    
21356789 cgaggtattcttttatggtcacaagaccaaatcaataatgtttggacacaca 21356840  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 431
Target Start/End: Original strand, 2344964 - 2345022
Alignment:
373 cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||||  ||||||||||||||||||||||  |||||||||  |||||||||    
2344964 cgaggtattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataa 2345022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 431
Target Start/End: Original strand, 41725488 - 41725541
Alignment:
378 tattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    ||||||||||||||||||||||||||| |||||  |||||| ||||| ||||||    
41725488 tattcttctatggtcacaagaccaaataaatagtatttggacacacaaacataa 41725541  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 24241474 - 24241526
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    |||||||||||| ||||||||| |||||||||||||  ||||||| |||||||    
24241474 gaggtattcttccatggtcacatgaccaaatcaataatgtttggacacacaca 24241526  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 16253026 - 16253077
Alignment:
375 aggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    ||||||||||| ||| |||||||||||||||||||  ||||||| |||||||    
16253026 aggtattcttccatgttcacaagaccaaatcaataatgtttggagacacaca 16253077  T

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Target: scaffold1339 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 169 - 112
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||| ||||| ||||||    
169 gaggtattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataa 112  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 47169243 - 47169299
Alignment:
375 aggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    |||||||||| ||| |||| |||||||||||||||| ||||||| ||||||||||||    
47169243 aggtattcttttatagtcataagaccaaatcaatagtgtttggacacacacacataa 47169299  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 1994962 - 1994907
Alignment:
373 cgaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacaca 428  Q
    |||| |||||| |||||||||||||||||||||||||  ||||||| | |||||||    
1994962 cgagatattctactatggtcacaagaccaaatcaataatgtttggacaaacacaca 1994907  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 2976555 - 2976505
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacaca 424  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||| |||||    
2976555 gaggtattcttccatggtcataagaccaaatcaatagtgtttggacacaca 2976505  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 8026463 - 8026520
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacacacataa 431  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||  || ||||||||    
8026463 gaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataa 8026520  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 10719742 - 10719794
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    |||||||||||| ||||||| |||||||||| ||||| ||||||| |||||||    
10719742 gaggtattcttccatggtcataagaccaaattaatagtgtttggacacacaca 10719794  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 33758790 - 33758842
Alignment:
374 gaggtattcttctatggtcacaagaccaaatcaatagggtttggatacacaca 426  Q
    |||||||||||| |||||||||||| ||||||||||  ||||||| |||||||    
33758790 gaggtattcttccatggtcacaagatcaaatcaatactgtttggacacacaca 33758842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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