View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_high_9 (Length: 446)
Name: NF15399_high_9
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 54289523 - 54289952
Alignment:
| Q |
18 |
ggatagaagctggaaaaaaccacctggtgtggctgctaaactcatagattgtaaatcatctaaaggtgcatacttttactgttaaatgtcattgaaagct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289523 |
ggatagaagctggaaaaaaccacctggtgtggctgctaaactcatagattgtaaatcatctaaaggtgcatacttttactgttaaatgtcattgaaagct |
54289622 |
T |
|
| Q |
118 |
gctgcattacattacagtacatgttataaggttgcaactgtaagggaaagaaaatatgttataggttacatatagttctaatgtat--tattattgagac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
54289623 |
gctgcattacattacagtacatgttataaggttgcaactgtaagggaaagaaaatatgttataggttacatatagttctaatgtatattattaatgagac |
54289722 |
T |
|
| Q |
216 |
agtgaaagacttctcaaaactgaaattatgggttgaattttgaagttctaactgctagtttgcctcgaaaaaacggctcaggattttatttcattgagta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54289723 |
agtgaaagacttctcaaaactgaaattatgggttgaattttgaagttctaactgctagtttgcctcgaaaaaacggctcaggattttatttcattgagta |
54289822 |
T |
|
| Q |
316 |
tacgctgcaaagtcctggtgagggtcgcaaacatctatattcagctattgggatgttaacaaatggctggtataacagactgtatacagtgacaggacag |
415 |
Q |
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| T |
54289823 |
tacgctgcaaagtcctggtgagggtcgcaaacatctatattcagctattgggatgttaacaaatggctggtataacagactgtatacagtgacaggacag |
54289922 |
T |
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| Q |
416 |
gtactattcaatatactgcagtgtctgtgt |
445 |
Q |
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| T |
54289923 |
gtactattcaatatactgcagtgtctgtgt |
54289952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 22 - 429
Target Start/End: Complemental strand, 11684745 - 11684338
Alignment:
| Q |
22 |
agaagctggaaaaaaccacctggtgtggctgctaaactcatagattgtaaatcatctaaaggtgcatacttttactgttaaatgtcattgaaagctgctg |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
11684745 |
agaagctggaaaaaaccacctggtgtggctgctaaactcatagattgtaaatcatctaaaggtgcatgcttttactcttaaatgtcattgaaagttgctg |
11684646 |
T |
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| Q |
122 |
cattacattacagtacatgttataaggttgcaactgtaagggaaagaaaatatgttataggttacatatagttctaatgtattattattgagacagtgaa |
221 |
Q |
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||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| || |
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| T |
11684645 |
cattattttgcagtacatgttataaggttgcaactataagggaaagaaaatatgttataggttatatatagttctaatgtatgcttaatgagacagagag |
11684546 |
T |
|
| Q |
222 |
agacttctcaaaactgaaattatgggttgaattttgaagttctaactgctagtttgcctcgaaaaaacggctcaggattttatttcattgagtatacgct |
321 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | || |||||||| ||||||||| |||||||||||||| |||||||||||||| |
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| T |
11684545 |
agacttctcaaaactgaaattatggattgaattttgacgttctaattattaatttgcctccaaaaaacggttcaggattttattttattgagtatacgct |
11684446 |
T |
|
| Q |
322 |
gcaaagtcctggtgagggtcgcaaacatctatattcagctattgggatgttaacaaatggctggtataacagactgtatacagtgacaggacaggtacta |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
11684445 |
gcaaagtcctggtgagggtcgcaaacatctatattcagctattgggatgttaacagatggttggtataacagactgtatacagcgacaggacaggtacta |
11684346 |
T |
|
| Q |
422 |
ttcaatat |
429 |
Q |
| |
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||| |||| |
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|
| T |
11684345 |
ttcgatat |
11684338 |
T |
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