View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_low_11 (Length: 415)
Name: NF15399_low_11
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 8945710 - 8945311
Alignment:
| Q |
7 |
aaaagattaacaagaggtgattgaaaaagaagattttgaaatagaaatttcatgtttttgtagaatagtatgaagggcttgtgactacacttgattggaa |
106 |
Q |
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| T |
8945710 |
aaaagattaacaagaggtgattgaaaaagaagattttgaaatagaaatttcatgtttttgtagaataatatgaagggcttgtgactacacttgattggaa |
8945611 |
T |
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| Q |
107 |
ctttattttagtttagtggtgtaagccttttatataccttcgcnnnnnnnnntttactaaagagaaatatattacatttcttttgtgatagcaacctgat |
206 |
Q |
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| T |
8945610 |
ctttattttagtttagtggtgtaagccttttatataccttcgcaaattttt-tttacta--gagaaatatattacatttcttttgtgatagcaacctcat |
8945514 |
T |
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| Q |
207 |
atatagattgatatatagttaatgaggcatgctgcaacaataaaaaatacttattgaattcatataaaagacttatagtgatagaagcatgcattacgga |
306 |
Q |
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| T |
8945513 |
atatagactgatatatagttaatgaggcatgctgcaacaataaaaaatacttattgaattcatataaaagactgatagtgagagaagcatgcattatgga |
8945414 |
T |
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| Q |
307 |
ctctccaatctccattgtgttaggttatgtaattattttaaaaaagtttccctgccatatgagttttcatgtgacatcttgaatactgaatcatcctttt |
406 |
Q |
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| T |
8945413 |
ctctccaatctccattgtgttaggttatgtaattcttttaaaaaagtttccctgccatatgagttttcatgtgacatcttgaatactgaatcatcctttt |
8945314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 8937522 - 8937450
Alignment:
| Q |
7 |
aaaagattaacaagaggtgattgaaaaagaagattttgaaatagaaatttcatgtttttgtagaatagtatga |
79 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||| || || ||||||||||||||||||| ||||| |
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| T |
8937522 |
aaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcatgtttttgtagaataatatga |
8937450 |
T |
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