View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15399_low_15 (Length: 355)
Name: NF15399_low_15
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 9046496 - 9046178
Alignment:
| Q |
15 |
atactataacgtgtaagatattacaaatccaatttggccaaatcaatatcagcacnnnnnnnagatgtctcaaaaaatctacattaaaccctgctaaagt |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9046496 |
atactataatgtgtaagatattacaaatccaatttgtccaaatcaatttcagcactttt-----atgtctcaaaaaatctaaattaaaccctgctcaagt |
9046402 |
T |
|
| Q |
115 |
gcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacgtaatgctagcagagtaacaaagcctttccaaaattacatacac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | | || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9046401 |
gcttaagttactaaatagaaaactaaaactgattgtaataaagtatatcatgtcacatgacgccagcaaagtaacaaagcctttccaaaattacatacac |
9046302 |
T |
|
| Q |
215 |
tattagcaaatatcaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgcatgcctgcaaccccttttatcataatt |
314 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9046301 |
cgttagcaaataacaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataatt |
9046202 |
T |
|
| Q |
315 |
atcatttgcaaaactaagattgct |
338 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9046201 |
atcatttgcaaaactaagattgct |
9046178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 42938656 - 42938437
Alignment:
| Q |
5 |
aggagcagagatactataacgtgtaagatattacaaatccaatttggccaaatcaatatcagcacnnnnnnnagatgtctcaaaaaatctacattaaacc |
104 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42938656 |
aggaccagaaatactataacgtgtaagatattacaaatccaatttggccaaatcaatatcagcactttttttagatgtctcaaaaaatctacattaaacc |
42938557 |
T |
|
| Q |
105 |
ctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacgtaatgctagcagagtaacaaagcctttccaaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
42938556 |
ctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacataatgctagcaaagtaacaaagcctttccaaaa |
42938457 |
T |
|
| Q |
205 |
ttacatacactattagcaaa |
224 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42938456 |
ttacatacactattagcaaa |
42938437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 42936791 - 42936685
Alignment:
| Q |
232 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttgcaaaactaa |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42936791 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttggaaaactaa |
42936692 |
T |
|
| Q |
332 |
gattgct |
338 |
Q |
| |
|
||||||| |
|
|
| T |
42936691 |
gattgct |
42936685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 266 - 338
Target Start/End: Complemental strand, 26084700 - 26084628
Alignment:
| Q |
266 |
gaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttgcaaaactaagattgct |
338 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084700 |
gaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttgcaaaactaagattgct |
26084628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University