View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_low_18 (Length: 333)
Name: NF15399_low_18
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 64 - 312
Target Start/End: Complemental strand, 8936563 - 8936316
Alignment:
| Q |
64 |
cataattgagtgcttggtaaaataaattgcgtattaaacaaaagctggagatgaaaacttcttaccattgataatggaacacaaactaagatctgaacat |
163 |
Q |
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| T |
8936563 |
cataattgagtgcttgataaaataaattgcgtattaaaaaaaaactggagatgaaaacttcttaccattgataatggaacacaaactaagatctgagc-t |
8936465 |
T |
|
| Q |
164 |
aaaaaattattcatgggttgtcacacaaaaaacaaattcaagcatttcaacgatattgtaccaaattgattttacacacatcatgttgcattagttggaa |
263 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936464 |
aaaaaattattcaagggttgtcacacaaaaaacaaattcaagcatttcaacgatattgtaccaaattgattttacacacatcatgttgcattagttggac |
8936365 |
T |
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| Q |
264 |
tcaacatccatgaattgagggtcatttcccattgcctccaaaatctcat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936364 |
gcaacatccatgaattgagggtcatttcccattgcctccaaaatctcat |
8936316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 216 - 311
Target Start/End: Complemental strand, 8913909 - 8913814
Alignment:
| Q |
216 |
atattgtaccaaattgattttacacacatcatgttgcattagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctca |
311 |
Q |
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| T |
8913909 |
atattgtatcatattgattttacacacctcacgctgcattagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctca |
8913814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 99 - 310
Target Start/End: Original strand, 7628366 - 7628581
Alignment:
| Q |
99 |
aaacaaaagctggagatgaaaacttcttaccattgataatggaacacaaa---ctaagatctgaacataaaa-aattattcatgggttgtcacacaaaaa |
194 |
Q |
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| T |
7628366 |
aaacaaaaactggagatcaaaacttcataccattaataatgaaaaaaaaaaaccttagacttggacataaaaaaattattcatgggttgtcacacaaaaa |
7628465 |
T |
|
| Q |
195 |
acaaattcaagcatttcaacgatattgtaccaaattgattttacacacatcatgttgcattagttggaatcaacatccatgaattgagggtcatttccca |
294 |
Q |
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| T |
7628466 |
ccaaattgaagcatctgaacaatactgcaccaaattgattttacacacctcacgttgcattagttggacacaacatccacaaattgagggtcatttccca |
7628565 |
T |
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| Q |
295 |
ttgcctccaaaatctc |
310 |
Q |
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|||||||||||||||| |
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| T |
7628566 |
ttgcctccaaaatctc |
7628581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 7614955 - 7615043
Alignment:
| Q |
64 |
cataattgagtgcttggtaaaataaattgcgtattaaacaaaagctggagatgaaaacttcttaccattgataatggaacacaaactaa |
152 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7614955 |
cataattgagtgcttggtaaaataaattgcgtattaaacaaaagctggagatgaaaacttcttaccattgataatggaacacaaactaa |
7615043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 228 - 320
Target Start/End: Original strand, 7615061 - 7615153
Alignment:
| Q |
228 |
attgattttacacacatcatgttgcattagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaaga |
320 |
Q |
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| T |
7615061 |
attgattttacacacatcatgttgcattagttggacgcaacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaaga |
7615153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 7636863 - 7636958
Alignment:
| Q |
216 |
atattgtaccaaattgattttacacacatcatgttgcattagttggaatcaacatccatgaattgagggtcatttcccattgcctccaaaatctca |
311 |
Q |
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| T |
7636863 |
atattgtatcatattgattttacacacctcacgctgcattagttggacacaacatccatgaaattggggtcatttcccattccctccaaaatctca |
7636958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 39097544 - 39097583
Alignment:
| Q |
273 |
atgaattgagggtcatttcccattgcctccaaaatctcat |
312 |
Q |
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||||||||||||||||||||||| ||||||||||| |||| |
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| T |
39097544 |
atgaattgagggtcatttcccatagcctccaaaatatcat |
39097583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 7656404 - 7656364
Alignment:
| Q |
269 |
atccatgaattgagggtcatttcccattgcctccaaaatct |
309 |
Q |
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| T |
7656404 |
atccatgaactcaggatcatttcccattgcctccaaaatct |
7656364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 40147636 - 40147592
Alignment:
| Q |
265 |
caacatccatgaattgagggtcatttcccattgcctccaaaatct |
309 |
Q |
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||||||||||||| | | ||||||||||||||||||||||||||| |
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| T |
40147636 |
caacatccatgaagtcatggtcatttcccattgcctccaaaatct |
40147592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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