View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15399_low_2 (Length: 575)
Name: NF15399_low_2
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 163 - 575
Target Start/End: Original strand, 26608509 - 26608922
Alignment:
| Q |
163 |
attaaaaagtttatgtgacacttagacatctatgcaacattctggaaaagtagactcatagtaaatggagcagagctggactctacacagtgtttaacaa |
262 |
Q |
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| T |
26608509 |
attaaaaagtttatgtgacacttagacatctatgcaacattctggaaaagtagactcatagtaaatggagcagagctggactctacacagtgtttaacaa |
26608608 |
T |
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| Q |
263 |
tttggagctactattaattataacaacctttcacgctgtgtatttatgctagaaaaggtatgtaaggctggctagaaggcacaagtatttgtttggcaca |
362 |
Q |
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| T |
26608609 |
tttggagctactattaattataacaacctttcacgctgtgtatttatgctagaaaaggtatgtaaggctggctagaaggcacaagtatttgtttggcaca |
26608708 |
T |
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| Q |
363 |
taaaggtcaaattgtggcaaaggaacatggcttcaaatcaagtgttagaggtgacatggtgacaaattcaagttactttggatatagggcattattatta |
462 |
Q |
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| T |
26608709 |
taaaggtcaaattgtggcaaaggaacatggcttcaaatcaagtgttagaggtgacatggtgacaaattcaagttactttggatatagggcattattatta |
26608808 |
T |
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| Q |
463 |
taattataataatcttctgttattggaatccaagttgaatctgactcattggactgtactgtataaaggcctaaacgagaa-ggaagcaatggtaccaaa |
561 |
Q |
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| T |
26608809 |
taattataataatcttctgttattggaatccaagttgaatctgactcattggactgtactgtataaaggcctaaacgagaagggaagcaatggtaccaaa |
26608908 |
T |
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| Q |
562 |
atcttgaaaactta |
575 |
Q |
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| T |
26608909 |
atcttgaaaactta |
26608922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 26607794 - 26607962
Alignment:
| Q |
1 |
ggaattaaatagaatcattgtgtgcaatcttgattttggcaaactttatactttagtgcttctattcgcgagtttggatctgcttcgtttactaatgagt |
100 |
Q |
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| T |
26607794 |
ggaattaaatagaatcattgtgtgcaatcttgattttggcaaactttatactttagtgcttctattcgcgagtttggatctgcttcgtttactaatgagt |
26607893 |
T |
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| Q |
101 |
ctagttttccagtttgttgcacaaatgtctgcacttgtcacaaaaaactttcaacggccaagattaaaa |
169 |
Q |
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| T |
26607894 |
ctagttttccagtttgttgcacaaatgtctgcacttgtcacaaaaaactttcaacggccaagattaaaa |
26607962 |
T |
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