View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15399_low_21 (Length: 269)

Name: NF15399_low_21
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15399_low_21
NF15399_low_21
[»] chr8 (11 HSPs)
chr8 (1-250)||(30648703-30648952)
chr8 (137-243)||(26089181-26089287)
chr8 (106-245)||(27714265-27714404)
chr8 (140-245)||(14727714-14727819)
chr8 (140-245)||(29552745-29552850)
chr8 (139-245)||(15329808-15329914)
chr8 (139-245)||(15510177-15510283)
chr8 (136-245)||(28693188-28693298)
chr8 (131-228)||(24509272-24509369)
chr8 (1-46)||(14727566-14727611)
chr8 (1-46)||(26089066-26089111)
[»] chr7 (2 HSPs)
chr7 (136-243)||(6610910-6611017)
chr7 (141-199)||(17292704-17292762)
[»] chr3 (2 HSPs)
chr3 (131-245)||(4819858-4819972)
chr3 (1-42)||(4819728-4819769)
[»] chr1 (1 HSPs)
chr1 (136-245)||(26086439-26086548)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 30648703 - 30648952
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgattatccatcatttgatcatagaataagatcaaagatcacaattataggtgctctg 100  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||| ||    
T  30648703 tatattattaagtgttggaacaaaacctagctcagaagtcactgattatcccacatgtgatcatagaataagatcaaagatcacaactataggtgctgtg 30648802  T
Q  101 ggaatttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcag 200  Q
      |||||||||| ||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648803 acaatttatataaatcgcattagaggagatatatcagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcag 30648902  T
Q  201 gattgagtccccctggtggaatttatcaggttagtgctggtgacactaac 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30648903 gattgagtccccctggtggaatttatcaggttagtgctggtgacactaac 30648952  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 26089181 - 26089287
Alignment:
Q  137 gaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtg 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| |||||||||||||||||||||    
T  26089181 gaggagcaacgtaacagttggttgatagttgcgactcttgttgcaactgcgatttatcaatcaggattgagtccccctagtggaatttatcaggttagtg 26089280  T
Q  237 ctggtga 243  Q
    || ||||    
T  26089281 ctagtga 26089287  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 27714265 - 27714404
Alignment:
Q  106 ttatatagatcgcattacaagagacatattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattg 205  Q
    ||||||| ||||||||| ||  ||  |||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||| |||||||||| ||||    
T  27714265 ttatataaatcgcattagaaatgatgtattagaggagcaacgcaacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattg 27714364  T
Q  206 agtccccctggtggaatttatcaggttagtgctggtgaca 245  Q
    | ||||  ||||||| |||||||||||| |||| ||||||    
T  27714365 actcccgttggtggagtttatcaggttaatgctagtgaca 27714404  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 14727714 - 14727819
Alignment:
Q  140 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctg 239  Q
    |||||||| |||| |||||||||||| || |||||| |||| |||||||| || |||||||  |||||||||||||||||| |||||||| |||||||||    
T  14727714 gagcaacgcaacatttggttgatagtcgccactcttattgcaactgccatgtaccaatcagttttgagtccccctggtggagtttatcagattagtgctg 14727813  T
Q  240 gtgaca 245  Q
    ||||||    
T  14727814 gtgaca 14727819  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 29552745 - 29552850
Alignment:
Q  140 gagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgctg 239  Q
    |||||||||||||||  ||||||||||||  | ||||||| |||||||| ||||||||||| | | ||||||||||||||| |||||||||||| ||||     
T  29552745 gagcaacgtaacactatgttgatagttgcagcccttgttgtgactgccacctatcaatcagtactaagtccccctggtggagtttatcaggttaatgcta 29552844  T
Q  240 gtgaca 245  Q
    ||||||    
T  29552845 gtgaca 29552850  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 15329808 - 15329914
Alignment:
Q  139 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgct 238  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| ||||||||    
T  15329808 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15329907  T
Q  239 ggtgaca 245  Q
    | |||||    
T  15329908 gatgaca 15329914  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 15510177 - 15510283
Alignment:
Q  139 ggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagtgct 238  Q
    |||| |||||||| |||||||  |||||||||||||| |||| ||| |||| ||  |||||    ||||||||||||||||| |||||||| ||||||||    
T  15510177 ggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatcagattagtgct 15510276  T
Q  239 ggtgaca 245  Q
    | |||||    
T  15510277 gatgaca 15510283  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 28693298 - 28693188
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcag-gttag 234  Q
    |||||| ||||| |||| |||||| ||||| ||||||||| |||| ||| |||| | | ||||||   |||  |||||||||||||||||||||  ||||    
T  28693298 agaggatcaacgcaacatttggttaatagtcgcgactcttattgcaactaccatgtttgaatcagctctgacaccccctggtggaatttatcagatttag 28693199  T
Q  235 tgctggtgaca 245  Q
    |||||||||||    
T  28693198 tgctggtgaca 28693188  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 24509272 - 24509369
Alignment:
Q  131 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatca 228  Q
    ||||||||||||||||| | |||||||||||| |||||||| || ||||| || || | ||||||| ||| | | | ||||||||| ||| |||||||    
T  24509272 atattagaggagcaacgcagcacttggttgattgttgcgaccctcgttgcaacagcgacctatcaaacagtactaaatccccctggcggattttatca 24509369  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14727566 - 14727611
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgat 46  Q
    |||||||||||||||||||||||||| |||| | |||||| |||||    
T  14727566 tatattattaagtgttggagcaaaacatagcatagaagtcgctgat 14727611  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 26089066 - 26089111
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcactgat 46  Q
    ||||||||||||| ||||||||||||||||| | ||| ||||||||    
T  26089066 tatattattaagttttggagcaaaacctagcatagaaatcactgat 26089111  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 6611017 - 6610910
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 235  Q
    ||||||| | |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6611017 agaggagaaccgtaacacttggttgataattgcgactctcgttgcaactgccatctatcaatcaggattgagtcctcctggtggaatttatcaggttagt 6610918  T
Q  236 gctggtga 243  Q
    | ||||||    
T  6610917 gttggtga 6610910  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 17292762 - 17292704
Alignment:
Q  141 agcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatca 199  Q
    ||||||| ||||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  17292762 agcaacgcaacacttggttgataattgcgactcttgttgcaacagccacctatcaatca 17292704  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 4819858 - 4819972
Alignment:
Q  131 atattagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcagg 230  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||| | ||  ||| || |||||| |||||||||    
T  4819858 atatcagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcagg 4819957  T
Q  231 ttagtgctggtgaca 245  Q
    ||| |||| ||||||    
T  4819958 ttaatgctagtgaca 4819972  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4819728 - 4819769
Alignment:
Q  1 tatattattaagtgttggagcaaaacctagcttggaagtcac 42  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  4819728 tatattatcaagtgttggagcaaaacctggcttggaagtcac 4819769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 26086548 - 26086439
Alignment:
Q  136 agaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttagt 235  Q
    |||||||||||| |||| |||||| ||||| ||  ||||| |||||||| |||| ||| ||||||   ||| ||||||||||||| |||||| |  ||||    
T  26086548 agaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccgagtagt 26086449  T
Q  236 gctggtgaca 245  Q
    || |||||||    
T  26086448 gccggtgaca 26086439  T

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