View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15399_low_3 (Length: 545)

Name: NF15399_low_3
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15399_low_3
NF15399_low_3
[»] chr5 (7 HSPs)
chr5 (197-527)||(26353189-26353519)
chr5 (106-196)||(32325811-32325901)
chr5 (106-196)||(7992408-7992498)
chr5 (106-196)||(12904980-12905070)
chr5 (200-278)||(9816563-9816641)
chr5 (145-196)||(34641930-34641981)
chr5 (385-419)||(38434774-38434808)
[»] chr3 (13 HSPs)
chr3 (197-421)||(26648626-26648848)
chr3 (106-201)||(53208685-53208780)
chr3 (106-192)||(32130160-32130246)
chr3 (205-368)||(20047330-20047496)
chr3 (106-196)||(7322855-7322945)
chr3 (124-196)||(9454604-9454676)
chr3 (451-524)||(26648844-26648917)
chr3 (197-372)||(20014618-20014793)
chr3 (213-256)||(26654636-26654680)
chr3 (479-515)||(19983418-19983454)
chr3 (465-524)||(19860352-19860411)
chr3 (305-371)||(20006701-20006767)
chr3 (426-460)||(20014497-20014531)
[»] chr7 (5 HSPs)
chr7 (105-196)||(36167730-36167821)
chr7 (107-196)||(19886572-19886661)
chr7 (107-196)||(32775171-32775260)
chr7 (106-197)||(12859245-12859336)
chr7 (153-198)||(11600122-11600167)
[»] chr8 (8 HSPs)
chr8 (106-194)||(1548139-1548227)
chr8 (106-195)||(34784519-34784608)
chr8 (106-197)||(23033395-23033486)
chr8 (106-192)||(3117707-3117793)
chr8 (111-197)||(3277517-3277603)
chr8 (106-196)||(20900774-20900864)
chr8 (121-168)||(29168561-29168608)
chr8 (160-196)||(15657347-15657383)
[»] chr2 (6 HSPs)
chr2 (106-194)||(44673172-44673260)
chr2 (106-196)||(25438287-25438377)
chr2 (123-192)||(37154903-37154972)
chr2 (145-196)||(6536545-6536596)
chr2 (145-197)||(21006375-21006427)
chr2 (145-197)||(24132210-24132262)
[»] chr1 (2 HSPs)
chr1 (225-420)||(1718684-1718879)
chr1 (485-524)||(1718951-1718990)
[»] chr6 (1 HSPs)
chr6 (106-198)||(13425676-13425768)
[»] chr4 (5 HSPs)
chr4 (106-196)||(16497910-16498000)
chr4 (106-194)||(2588491-2588579)
chr4 (105-194)||(5650758-5650847)
chr4 (121-196)||(52249500-52249575)
chr4 (145-196)||(28075449-28075500)


Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 197 - 527
Target Start/End: Complemental strand, 26353519 - 26353189
Alignment:
Q  197 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26353519 accaccatcatcttcttcttaaaactttattttgtttttgaattcccttcatgaaactcacgacagtgatgctcttttcatactcttgattgtgttgaaa 26353420  T
Q  296 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26353419 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggc 26353320  T
Q  396 atgagtaacacatattttgctatgtaaatcatgaagtgaatctaaagccaaactcatgtatatattattaacactcgagcttcctatctgaagtgaagca 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26353319 atgagtaacacatattttgctatgtaaatcatgaagtgaatctaatgccaaactcatgt-tatattattaacacttgagcttcctatctgaagtgaagca 26353221  T
Q  496 taactctttcctaatttcatcatgagtaactt 527  Q
    ||||||||||||||||||||||||||||||||    
T  26353220 taactctttcctaatttcatcatgagtaactt 26353189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 32325811 - 32325901
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  32325811 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtacgatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 32325901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 7992408 - 7992498
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  7992408 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 7992498  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 12904980 - 12905070
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||    
T  12904980 ggttcgtaagtaggatcgaagcatggtcgatgtgttgtggcacgtaagatcgtgcgatcctacgtgctggaactcgttcctgactaccttg 12905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 9816563 - 9816641
Alignment:
Q  200 accatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcata 278  Q
    |||| |||| |||||||||| |||||||||| |||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  9816563 accaccatcgtcttcttaaacctttattttgctttttaattctcttcctgaaactcatgacagtgatgctattttcata 9816641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 34641930 - 34641981
Alignment:
Q  145 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  34641930 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 34641981  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 38434808 - 38434774
Alignment:
Q  385 gtagtattggcatgagtaacacatattttgctatg 419  Q
    ||||||||||||||| |||||||||||||||||||    
T  38434808 gtagtattggcatgactaacacatattttgctatg 38434774  T

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Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 197 - 421
Target Start/End: Original strand, 26648626 - 26648848
Alignment:
Q  197 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactcttattgtgttgaaaa 296  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||| ||||||  ||||||||||||||| |   | |||||| ||    
T  26648626 accaccatcatctttttcttaaaactttaatttgtttttgaattctcctcctgaaactcatgacagtagtgctcttttcatactgtccatttgttgataa 26648725  T
Q  297 caattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggca 396  Q
    |||  ||||||  ||||| || ||||||||||||||||   ||||||||||||| ||||||||||| |||||||||  || | |||| |||| |||||||    
T  26648726 caaaggaaggagaaagtagtattagttttaatgagttatgatatatatttttatcaactgatatgcctgtgttattatttatctataagtagcattggca 26648825  T
Q  397 tgagtaacacatattttgctatgta 421  Q
    ||| || |||  |||||||||||||    
T  26648826 tgactagcac--attttgctatgta 26648848  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 106 - 201
Target Start/End: Original strand, 53208685 - 53208780
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgaccac 201  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  53208685 ggtttgtaagtaggatcgaaacacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttgcccac 53208780  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 32130246 - 32130160
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 192  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||    
T  32130246 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgcgactcgttcctgactac 32130160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 368
Target Start/End: Original strand, 20047330 - 20047496
Alignment:
Q  205 catcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactct-tattgtgttgaaaacaattga 303  Q
    ||||||| ||||||||  |||| ||||||||||||| | ||||| ||||| | ||||||||| ||||||||||||||| |||| |||||| ||||| |||    
T  20047330 catcttcatcttaaaaagttatcttgtttttgaattttgttcatcaaacttatgacagtgattctcttttcatactctctattttgttgataacaaatga 20047429  T
Q  304 aggaataa--gtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgt 368  Q
    ||||  ||   ||| | ||||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  20047430 aggataaattttaagattagttttgatgagttatgctatatatttttattaactgatatgattgtgt 20047496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 7322945 - 7322855
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||||||| |  ||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  7322945 ggttcgtaagtagaactgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctggctaccttg 7322855  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 9454676 - 9454604
Alignment:
Q  124 aagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||| |||||||||||    
T  9454676 aagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggaatcgttcttgactaccttg 9454604  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 451 - 524
Target Start/End: Original strand, 26648844 - 26648917
Alignment:
Q  451 atgtatatattattaacactcgagcttcctatctgaagtgaagcataactctttcctaatttcatcatgagtaa 524  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||  ||||||||||    
T  26648844 atgtatatattatcaacacttgagcttcctatctgaagtgaagcataactcttccttaattttttcatgagtaa 26648917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 197 - 372
Target Start/End: Complemental strand, 20014793 - 20014618
Alignment:
Q  197 accaccatcatcttcttcttaaaactttattttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaa 295  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||   || ||||  || ||||||||||||  ||| |||||| |    
T  20014793 accaccaccatcttcttcttaaaatttt-tgttgtttttgaattctgttcctgaaactcgttacggtgacacttttttcatactctccattttgttgata 20014695  T
Q  296 acaattgaaggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttatt 372  Q
    | || ||||||   |||||||||||| ||| ||||||||   ||||| |||||||||||||||||| ||| ||||||    
T  20014694 agaaatgaaggcggaagtaatactagctttgatgagttatgatatatgtttttattaactgatatgattgggttatt 20014618  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 26654636 - 26654680
Alignment:
Q  213 tcttaaaactttat-tttgtttttgaattctcttcatgaaactca 256  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  26654636 tcttaaaactttatatttgtttttgaattctcttcatgaaactca 26654680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 515
Target Start/End: Original strand, 19983418 - 19983454
Alignment:
Q  479 ctatctgaagtgaagcataactctttcctaatttcat 515  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19983418 ctatctgaagtgaagcatagctctttcctaatttcat 19983454  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 19860352 - 19860411
Alignment:
Q  465 aacactcgagcttcctatctgaagtgaagcataactctttcctaatttcatcatgagtaa 524  Q
    |||||| |||| | ||| ||||||||||||||||||||||| |||||| | |||||||||    
T  19860352 aacactagagccttctagctgaagtgaagcataactctttcataattttagcatgagtaa 19860411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 371
Target Start/End: Complemental strand, 20006767 - 20006701
Alignment:
Q  305 ggaataagtaatactagttttaatgagttaatctatatatttttattaactgatatgcttgtgttat 371  Q
    ||||||||||||||||||||  || |||||   ||||| ||||||||| ||| ||||||||||||||    
T  20006767 ggaataagtaatactagtttagataagttatgatatatgtttttattatctgctatgcttgtgttat 20006701  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 460
Target Start/End: Complemental strand, 20014531 - 20014497
Alignment:
Q  426 atgaagtgaatctaaagccaaactcatgtatatat 460  Q
    |||||||||||||||| ||||||||||||||||||    
T  20014531 atgaagtgaatctaaatccaaactcatgtatatat 20014497  T

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Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 36167730 - 36167821
Alignment:
Q  105 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  36167730 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactaccttg 36167821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 19886661 - 19886572
Alignment:
Q  107 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||    
T  19886661 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctacgtgctgggactcgttcctgactaccttg 19886572  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 32775260 - 32775171
Alignment:
Q  107 gttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||    
T  32775260 gttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaaggtcgtgtgatcctacatgctgggactcgttcctgactaccttg 32775171  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 12859245 - 12859336
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 197  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  12859245 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactaccttga 12859336  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 11600122 - 11600167
Alignment:
Q  153 gatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 198  Q
    ||||||||||||||||| || |||||||| ||||| ||||||||||    
T  11600122 gatcgtgcgatcctacaagctgggactcgatcctggctaccttgac 11600167  T

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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 1548227 - 1548139
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 194  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  1548227 ggttcgtaagtaggatcgaagcacgttcgaggtgctgtggcacgtaagatcgtgcgatcctacatgctgggactcgttcctgactacct 1548139  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 34784519 - 34784608
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacctt 195  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  34784519 ggtttgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacctt 34784608  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 23033486 - 23033395
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 197  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||    
T  23033486 ggttcgtaagtaggatcgaagcacggtcgaggtgttgtggcacgtaagatcatgcgatcctacatgctgggactcgttcctgagtaccttga 23033395  T

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Target: chr8; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 3117793 - 3117707
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 192  Q
    |||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| ||| ||||||| |||||||||||    
T  3117793 ggttcgtaagtaggatcgaagcacggtcgaggtactgtggcacgtaagatcgtgcgatcctacgtgctgggactcattcctgactac 3117707  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 111 - 197
Target Start/End: Complemental strand, 3277603 - 3277517
Alignment:
Q  111 gtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 197  Q
    ||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  3277603 gtaagtaggattgaagcacggtcgaggtgttgtggcacgtaagatcgtgcgatcctacatgctgggattcgttcctgactaccttga 3277517  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 20900864 - 20900774
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||    
T  20900864 ggtttgtaagtaggatcgaagcacagtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggacttgttcctgactaccttg 20900774  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 29168561 - 29168608
Alignment:
Q  121 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctac 168  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  29168561 tcgaagcacggtcgaggtgctgtggcacgtaagatcgtgtgatcctac 29168608  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 15657383 - 15657347
Alignment:
Q  160 cgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  15657383 cgatcctacgtgctgggactcgttcctgactaccttg 15657347  T

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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 44673260 - 44673172
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 194  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  44673260 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 44673172  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 25438377 - 25438287
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||    
T  25438377 ggttcgtaagtaggatcaaagcacggtcgaggtgctgtggcacgtaagatcatgcgatcctacgtgctgggactcgttcctgactaccttg 25438287  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 37154903 - 37154972
Alignment:
Q  123 gaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactac 192  Q
    ||||||||| |||| ||  |||||||||| ||||||||||||||||  |||||||||||||| |||||||    
T  37154903 gaagcacggtcgagatgtcgtggcacgtaagatcgtgcgatcctacgagccgggactcgttcttgactac 37154972  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 6536596 - 6536545
Alignment:
Q  145 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  6536596 gcacgtaagatcgtgcgatcctacatgctgggactcgatcctggctaccttg 6536545  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 21006375 - 21006427
Alignment:
Q  145 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 197  Q
    ||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||    
T  21006375 gcacgtaagatcgtgcgatcctacgtgctgggactcgatcctggctaccttga 21006427  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 24132262 - 24132210
Alignment:
Q  145 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttga 197  Q
    ||||||| |||||||||||||||| ||| |||| ||| ||||| |||||||||    
T  24132262 gcacgtaagatcgtgcgatcctacgtgctgggattcgatcctggctaccttga 24132210  T

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Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 225 - 420
Target Start/End: Original strand, 1718684 - 1718879
Alignment:
Q  225 attttgtttttgaattctcttcatgaaactcacgacagtgatgctcttttcatactctt-attgtgttgaaaacaattgaaggaataagtaatactagtt 323  Q
    ||||||||||||| || |||| |||||||||| |||| |||||||||||| |||||||| ||| |||||| ||||| |||||||  |||||||| |||||    
T  1718684 attttgtttttgacttttctttatgaaactcatgacattgatgctctttt-atactcttcattttgttgataacaaatgaaggagaaagtaatattagtt 1718782  T
Q  324 ttaatgagtta--atctatatatttttattaactgatatgcttgtgttattggttgtatataggtagtattggcatgagtaacacatattttgctatgt 420  Q
    |||||||||||  || |||| ||||||||||||||||||||||||||||||  || | |||| |||| ||| |||||| ||| ||  ||||||||||||    
T  1718783 ttaatgagttatgatgtataaatttttattaactgatatgcttgtgttattatttatctataagtaggatttgcatgactaagac--attttgctatgt 1718879  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 524
Target Start/End: Original strand, 1718951 - 1718990
Alignment:
Q  485 gaagtgaagcataactctttcctaatttcatcatgagtaa 524  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1718951 gaagtgaagcataactctttcctaatttcatcatgagtaa 1718990  T

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Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 13425676 - 13425768
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttgac 198  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||    
T  13425676 ggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacataagatcgtgcgatcctacgtgctgcgactcgttcctgactaccttgac 13425768  T

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Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 16497910 - 16498000
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  16497910 ggttcgtaagtaggaccgaagcacggtcgaggtgctgtggcacatacgatcgtgcgatcctacgtgctgggactcgttcttgactaccttg 16498000  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 2588491 - 2588579
Alignment:
Q  106 ggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 194  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  2588491 ggttcgtaagtaggaccgaagtacggtcgaggtgctgtggcacgtaagatcgtgcgatcctacgtgctgggactcgttcctgactacct 2588579  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 5650758 - 5650847
Alignment:
Q  105 tggttcgtaagtaggatcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactacct 194  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||| |||  ||||||||||||||||||||    
T  5650758 tggttcgtaagtaggatcgaagcacggtcgaggtgctgtggcacgtgagattgtgcgatcctacgtgcttggactcgttcctgactacct 5650847  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 52249500 - 52249575
Alignment:
Q  121 tcgaagcacggccgaggtgctgtggcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||| | | ||||||| |||||||||||||||    
T  52249500 tcgaagcacggtagaggtgctgtggcacgtaagatcgtgcgatcctacgtactgggactcattcctgactaccttg 52249575  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 28075500 - 28075449
Alignment:
Q  145 gcacgtacgatcgtgcgatcctacatgccgggactcgttcctgactaccttg 196  Q
    ||||||| ||||||||||||||||| || |||||||| ||||| ||||||||    
T  28075500 gcacgtaagatcgtgcgatcctacaagctgggactcgatcctggctaccttg 28075449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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