View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15399_low_4 (Length: 502)
Name: NF15399_low_4
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15399_low_4 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Original strand, 33057447 - 33057916
Alignment:
| Q |
20 |
aagagtaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgag |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057447 |
aagaggaacgtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgag |
33057546 |
T |
|
| Q |
120 |
caatcctgtatcacaaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgc |
219 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057547 |
caatcctgcaccacaaaaatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgc |
33057646 |
T |
|
| Q |
220 |
tccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057647 |
tccaaatttaaatatacaagtttggatagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacatt |
33057746 |
T |
|
| Q |
320 |
caattgtatcaggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaacatatgtgatgaatcgtg |
419 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33057747 |
caattgcatcaggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactatgcaaggaaggcaacatatgtgatgaatcgtg |
33057846 |
T |
|
| Q |
420 |
agccaaaatgatccattttaggccagggaggtgatgtgatgcactttcacgtatatcatgctgctgcttc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33057847 |
agccaaaatgatccattttaggccagggaggtgatgtgatgcactttcacgtatatcatgctgctgcttc |
33057916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 42 - 403
Target Start/End: Original strand, 33262529 - 33262887
Alignment:
| Q |
42 |
aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatag |
141 |
Q |
| |
|
|||||||||| || ||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
33262529 |
aatgaattgtgtcgtccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaccaatcctgtattcaacttatac |
33262628 |
T |
|
| Q |
142 |
tcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtt |
241 |
Q |
| |
|
|| | |||||||||| || |||| || ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33262629 |
tcctt---ctcacgatgatcccgcccaatagaggtaggagaaggaagttgaggcaaagattccaacaacctgcaatgctccaaatttaaatatacaagtt |
33262725 |
T |
|
| Q |
242 |
tggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggct |
341 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
33262726 |
tggaaagcttcctcaggctaggtagtgtcacaaaatcatttccccctaaatttaatctttctagccaatgtaagcattcaattgtgccaggcacttggcg |
33262825 |
T |
|
| Q |
342 |
tagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33262826 |
tagatagcaaaagcttatgtcaacattacgcaaacaatgtaaactacgcaaggaaggcaaca |
33262887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 32 - 402
Target Start/End: Complemental strand, 33644655 - 33644288
Alignment:
| Q |
32 |
ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatc |
131 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
33644655 |
ggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctcctgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctgaaat |
33644556 |
T |
|
| Q |
132 |
acaaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaa |
231 |
Q |
| |
|
|| | || ||| | | || || | || |||| || ||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
33644555 |
ccagacatcgtcattctcatctcgtt---cccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaa |
33644459 |
T |
|
| Q |
232 |
tatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
33644458 |
tatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgaatgtaaacattcaattgaatcag |
33644359 |
T |
|
| Q |
332 |
gcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaac |
402 |
Q |
| |
|
| |||||||||||| |||| |||| ||||||| ||||||||||| |||| ||| ||||||| |||||| |
|
|
| T |
33644358 |
gaacatggcttagacggcaatagctaatgtcaatgctacgcaaacaatataagctatgcaaggatggcaac |
33644288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 33 - 403
Target Start/End: Original strand, 33304378 - 33304745
Alignment:
| Q |
33 |
gtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatca |
132 |
Q |
| |
|
|||||||| |||||||||| ||| |||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33304378 |
gtttgcctcaatgaattgtgtcaaccatgaaaatgtcatgctactgcaacgttccctctcacccaattttggacagttgaaaatgaacaatcctgtaggc |
33304477 |
T |
|
| Q |
133 |
caaat------atagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaat |
226 |
Q |
| |
|
|| || ||| | || || ||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
33304478 |
cagatccagaaatatttgttgttctcacgaataa---------tattggtaggagaaggaagttgaggcaaagattccaacaacatgcaatgctgcaaat |
33304568 |
T |
|
| Q |
227 |
ttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||| | | |||||||||||||| |
|
|
| T |
33304569 |
ttaaatatacaagtttggaaagcttcctcaggctaggtagagtcacaaaattgtttccctctaagtttaatctttctagcgagtataaacattcaattgc |
33304668 |
T |
|
| Q |
327 |
atcaggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca |
403 |
Q |
| |
|
|||||| || |||||||||| ||||||||| |||||||| | ||||||||| ||| ||| ||||||| ||||||| |
|
|
| T |
33304669 |
atcaggaacttggcttagatggcaaaagctaatgtcaacgtctcgcaaacaaactaagctatgcaaggatggcaaca |
33304745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 150 - 395
Target Start/End: Original strand, 33285626 - 33285871
Alignment:
| Q |
150 |
ctcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagc |
249 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33285626 |
ctcacgatgatcctccccaatattggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctccaaatttaaatatacaagtttggacagc |
33285725 |
T |
|
| Q |
250 |
ttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagc |
349 |
Q |
| |
|
|| ||||||||||||| ||||||||||| ||||||| |||| |||||| |||||||||||| |||||||||||||| || | ||| ||||||||| || |
|
|
| T |
33285726 |
tttctcaggctaggtagtgtcacaaaattgtttccccctaagtttaatatttctagccaatataaacattcaattgcatatgacacttggcttagacggc |
33285825 |
T |
|
| Q |
350 |
aaaagcttatgtcaaccttacgcaaacaacataaactacgcaagga |
395 |
Q |
| |
|
||||||| |||| ||| | |||||||||| |||| ||| ||||||| |
|
|
| T |
33285826 |
aaaagctaatgttaacttcacgcaaacaatataagctatgcaagga |
33285871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 29 - 403
Target Start/End: Original strand, 9166642 - 9167013
Alignment:
| Q |
29 |
gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgt |
128 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| ||| ||||||||| |||||||||||| | |||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9166642 |
gtgggtttgcctgaataaattgcatcatccatgaaaatgtcatgctactgcaatgttccttatcactcaattctggacagttgaaaatgaccaatcctgt |
9166741 |
T |
|
| Q |
129 |
a-tc-acaaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaat |
226 |
Q |
| |
|
|| | ||| || | || |||| |||| || | | || || ||| ||||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
9166742 |
tgtcgagaaaaat-----ttgttctcattatgagcccactcgatagtgttagaaaaaggaagttgaggcaaaaactccaacaacctgcaatgctccaaat |
9166836 |
T |
|
| Q |
227 |
ttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgt |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||| |||||||| ||||| |||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
9166837 |
ttaaatatacaagtttggaaagcttcctcaagctaggtagtgtcgcaaaatcgattccccctaagtttaatctttctagccaccgtaaacattcaattgt |
9166936 |
T |
|
| Q |
327 |
atcaggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca |
403 |
Q |
| |
|
|||||||| |||||||||| |||| |||| |||||||| | |||||||||| ||||||||||||||||| |||||| |
|
|
| T |
9166937 |
atcaggcaattggcttagatggcaatagctaatgtcaacttcacgcaaacaatataaactacgcaaggaatgcaaca |
9167013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 42 - 403
Target Start/End: Original strand, 33398957 - 33399315
Alignment:
| Q |
42 |
aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatcacaaatatag |
141 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||| | || || | |
|
|
| T |
33398957 |
aatgaattgtatcatccatgaaaatgtcatgctactgcaacgttccctctcacccaattttgaacagttgaaaatgaccaatcctgaaatccagtcatcg |
33399056 |
T |
|
| Q |
142 |
tcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtt |
241 |
Q |
| |
|
|| | | || || | || |||| || ||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
33399057 |
tcattctcatctcgtt---cccgcccaatagtggtaggggaaggaagttgaggcaaagattccaacaacttgcagtgttccaaatttaaatatacaagtt |
33399153 |
T |
|
| Q |
242 |
tggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggct |
341 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||| || ||||| |
|
|
| T |
33399154 |
cggaaagcttcctcaggctaggtagtgtcacaaaattgtttccctttaaatttaatctttctagccaatgtaaatcttcaattgcatcaggaacttggct |
33399253 |
T |
|
| Q |
342 |
tagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca |
403 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||| ||| ||| ||||||| ||||||| |
|
|
| T |
33399254 |
tagattgcaaaagctaatgtcaactccacgcaaacaatctaagctatgcaaggatggcaaca |
33399315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 36 - 375
Target Start/End: Complemental strand, 31562935 - 31562596
Alignment:
| Q |
36 |
tgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatcctgta |
129 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||| ||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
31562935 |
tgccttaatgaattgtgccatccatgaaaatgtcatgctcctgcaatgctccctctcactctcagccaatttcggacagttaaaaatgaccaatcctgta |
31562836 |
T |
|
| Q |
130 |
tcacaaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaattta |
229 |
Q |
| |
|
|| || | || ||||||| || || |||| || |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
31562835 |
gtccacc-at-----ttgttctcacgacgatcccgcccaatagtggtaggagaaggaagttgaggcaaagattccaacaactcgcaatgctccaaattta |
31562742 |
T |
|
| Q |
230 |
aatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatc |
329 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||||||| ||||||| |||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
31562741 |
aatatacaagtttggaaagcttccacaagctaggtagtgtcacaaaatagtttccccctaaatttaatctttctagcgagcttaaacattcaattgcatc |
31562642 |
T |
|
| Q |
330 |
aggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaa |
375 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
31562641 |
aggcacttggcttagacggcaaaagctaatgtcaactgtacgcaaa |
31562596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 167 - 401
Target Start/End: Original strand, 33410030 - 33410264
Alignment:
| Q |
167 |
cagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaa |
266 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
33410030 |
cagtagtggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatctaaatattcaagtttggaaagcttcctcaagctaggtag |
33410129 |
T |
|
| Q |
267 |
tgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaacc |
366 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| || ||| |||||| ||||||||| || ||||| |
|
|
| T |
33410130 |
tgtcacaaaatagtttcccgctaaatataatctttctagcgaatgtaaaccttcaattgcatcaggaacttggtttagatggcaaaagctaatatcaact |
33410229 |
T |
|
| Q |
367 |
ttacgcaaacaacataaactacgcaaggaaggcaa |
401 |
Q |
| |
|
| |||||||||| |||| ||| |||| || ||||| |
|
|
| T |
33410230 |
tgacgcaaacaatataagctatgcaatgatggcaa |
33410264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 32 - 403
Target Start/End: Original strand, 33388047 - 33388421
Alignment:
| Q |
32 |
ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgt-at |
130 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||| ||||||||| |||||| ||||| ||||||| ||||||||||||||||| || ||||||||| || |
|
|
| T |
33388047 |
ggtttgccttaataaattgtgtcatccatgaaaatgtcatgctactgcaacactccctatcacccagttttggacagttgaaaacgatcaatcctgtgat |
33388146 |
T |
|
| Q |
131 |
ca---caaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatt |
227 |
Q |
| |
|
| |||| || | | || |||||||||| || |||| || ||||| || ||||||||||||| ||||||| ||| || ||||||||||||||||| |
|
|
| T |
33388147 |
ccacccaaacttatgctt-gttctcacgatgatcccgcccaatagtggtaagagaaggaagttgaggaaaagatttcaagaacttgcaatgctccaaatt |
33388245 |
T |
|
| Q |
228 |
taaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgta |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||| | |
|
|
| T |
33388246 |
taaatatacaagtttggaaagcttcctcaagctaggtagtgtcacaaaatcgtttccccctaaatttaatttttctagtgagtgtaaacattcaattgaa |
33388345 |
T |
|
| Q |
328 |
tcaggcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaaca |
403 |
Q |
| |
|
|| || || || |||||| |||||||| |||||||| |||||||||||| ||| ||| ||| ||| ||||||| |
|
|
| T |
33388346 |
tcgggaacttgatttagatgacaaaagctaatgtcaactttacgcaaacaatttaagctatgcacggatggcaaca |
33388421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 173 - 353
Target Start/End: Original strand, 33358898 - 33359078
Alignment:
| Q |
173 |
tggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcac |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
33358898 |
tggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttagaaagcttcctcaggctaggtagtgtcac |
33358997 |
T |
|
| Q |
273 |
aaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaa |
353 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| || || || ||||||| |||||| |
|
|
| T |
33358998 |
aaaatcgtttccccctaaatttaatatttctagccaatgtaaacattcaattgcatcgggaacttgacttagatggcaaaa |
33359078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 182 - 364
Target Start/End: Original strand, 33271865 - 33272047
Alignment:
| Q |
182 |
aaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtt |
281 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
33271865 |
aaggaagtcgaggcaaagattccaacaacttgcaatgttccaaatttaaatatacaagtttggaaagcttcctcaggctaggtagtgtcacaaaattgtt |
33271964 |
T |
|
| Q |
282 |
tcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaa |
364 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||| |||||| || |||| ||||| ||||||||| ||||||| |
|
|
| T |
33271965 |
tccccctaaatctaatctttctagccaatgtaaacattcaattgcatcaggaacttggcgtagatggcaaaagctaatgtcaa |
33272047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 28870145 - 28870013
Alignment:
| Q |
174 |
ggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcaca |
273 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
28870145 |
ggtaggagaaggaagttgaggcaaagattcaaacaacttgcaatgctccaaatttaaatattcaagtttggaaagcttcctcaggctaggcagtgtcaca |
28870046 |
T |
|
| Q |
274 |
aaatcgtttcccgctaaatttaatctttctagc |
306 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||| |
|
|
| T |
28870045 |
aaatagtttccccgtaagtttaatctttctagc |
28870013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 33409865 - 33409959
Alignment:
| Q |
32 |
ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct |
126 |
Q |
| |
|
||||||||| |||||| ||| ||||||| ||| ||| ||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
33409865 |
ggtttgcctgaatgaaatgtgccatccatgaaattgtgatgctactgcaacgttccctctcaaccaattttggacagttgaaaatgaacaatcct |
33409959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 33271678 - 33271782
Alignment:
| Q |
31 |
gggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcac------ccaattttggacagttgaaaatgagcaatc |
124 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||| ||||| ||| |||||| |||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
33271678 |
gggtttgccataatgaattgtatcatccatgaaaatgtcaagctactgcaacgttccctctcacagtcagccaattttggacagttgaaaatgaccaatc |
33271777 |
T |
|
| Q |
125 |
ctgta |
129 |
Q |
| |
|
||||| |
|
|
| T |
33271778 |
ctgta |
33271782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 33285501 - 33285581
Alignment:
| Q |
43 |
atgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaat |
123 |
Q |
| |
|
||||||||| |||||||| ||| || |||||| |||||| ||||||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
33285501 |
atgaattgtatcatccatgaaaatgccatgctactgcaacgttccctttcacctaattttggacagttgaaaatgaccaat |
33285581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 28870274 - 28870188
Alignment:
| Q |
42 |
aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgt |
128 |
Q |
| |
|
||||||||||||||||||| ||| || |||||| | ||| ||||||||||||| || ||||||||||||||||||| ||| ||||| |
|
|
| T |
28870274 |
aatgaattgtttcatccatgaaaatgccatgctacaacaacgttccctctcacctaaatttggacagttgaaaatgatcaaacctgt |
28870188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 33358799 - 33358849
Alignment:
| Q |
42 |
aatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctc |
92 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
33358799 |
aatgaattgtttcatccatgaaagtgtcatgctactgcaacgttccctctc |
33358849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 402
Target Start/End: Original strand, 537 - 907
Alignment:
| Q |
32 |
ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatc |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||| ||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
537 |
ggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcctttagt |
636 |
T |
|
| Q |
132 |
acaaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaa |
231 |
Q |
| |
|
||| ||| |||| || |||| ||| | || |||| || || | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
637 |
ccaataatattcgttgttctcatgataatccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaa |
736 |
T |
|
| Q |
232 |
tatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcag |
331 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
737 |
tatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcag |
836 |
T |
|
| Q |
332 |
gcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaac |
402 |
Q |
| |
|
| ||||||||||||| ||||||||| ||||||| |||||||||||| ||||| |||| ||| |||||||| |
|
|
| T |
837 |
gaacatggcttagatggcaaaagctaatgtcaatgttacgcaaacaatataaaatacgaaagcaaggcaac |
907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 32 - 402
Target Start/End: Original strand, 6283 - 6653
Alignment:
| Q |
32 |
ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgtatc |
131 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||| ||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
6283 |
ggtttgcctgaatgaattgtttcatccatgaaaatgttatgctactacaacattccctctcacccaattttggacagttgaaaatgaccaatcctttagt |
6382 |
T |
|
| Q |
132 |
acaaatatagtcgtcgtactcacgatgaacctccccagtattggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaa |
231 |
Q |
| |
|
||| ||| |||| || |||| ||| | || |||| || || | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
6383 |
ccaataatattcgttgttctcatgataatccggcccaatagtgcttggaaaaggaagttgaggcaacgattccaacaacttgcaatgctccaaatttaaa |
6482 |
T |
|
| Q |
232 |
tatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcag |
331 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
6483 |
tatacaagtctggaaagcttcctcatgctaggtagtgtcacaaaattatttccccctaaatttaatctttctagccgatgtaaacattcaattgcatcag |
6582 |
T |
|
| Q |
332 |
gcacatggcttagatagcaaaagcttatgtcaaccttacgcaaacaacataaactacgcaaggaaggcaac |
402 |
Q |
| |
|
| ||||||||||||| ||||||||| ||||||| |||||||||||| ||||| |||| ||| |||||||| |
|
|
| T |
6583 |
gaacatggcttagatggcaaaagctaatgtcaatgttacgcaaacaatataaaatacgaaagcaaggcaac |
6653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 174 - 392
Target Start/End: Complemental strand, 17440856 - 17440638
Alignment:
| Q |
174 |
ggtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcaca |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
17440856 |
ggtaggaaaaggaagttgaggcaaagattccaacaacttgcaatgctgcaaatttaaatatacaagtttcgaaagcttcctcaggctaggtagtgtcgca |
17440757 |
T |
|
| Q |
274 |
aaatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttagatagcaaaagcttatgtcaaccttacgca |
373 |
Q |
| |
|
||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||| || |||||||| | ||||| |
|
|
| T |
17440756 |
aaatcatttccccctaaatttaatctttctacccaatgtaaacattcaattgtatccggcacttggcttagacggcaaaaactaatgtcaacttcacgca |
17440657 |
T |
|
| Q |
374 |
aacaacataaactacgcaa |
392 |
Q |
| |
|
||||| |||| ||| |||| |
|
|
| T |
17440656 |
aacaatataagctatgcaa |
17440638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 17440996 - 17440898
Alignment:
| Q |
31 |
gggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgta |
129 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||||| ||| || |||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
17440996 |
gggtttgccttaatgaattgcatcatccatgaaaatgtcatgctactgtaacattccctctcacccaattttggacagttgaagatgaacaatcctgta |
17440898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 178 - 325
Target Start/End: Complemental strand, 31499020 - 31498873
Alignment:
| Q |
178 |
ggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||| | |||||||||||||||||||||||| | |
|
|
| T |
31499020 |
ggaaaaggaagttgaggcaaagattccaacaatttgcaatgttctaagtttaaacatacaagtttggaaaggtccctcaggctaggtaatgtcacaaact |
31498921 |
T |
|
| Q |
278 |
cgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg |
325 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
31498920 |
tgtttccccctaaatttaactcttctaaccaatgtaaacatccaattg |
31498873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 175 - 345
Target Start/End: Original strand, 31157250 - 31157420
Alignment:
| Q |
175 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
31157250 |
gtaggaaaaggaagttgaggcaaagattccaaaagcttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggcagtgtcacaa |
31157349 |
T |
|
| Q |
275 |
aatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattgtatcaggcacatggcttaga |
345 |
Q |
| |
|
||| ||| ||| ||| ||||||||||||||| | | ||| |||| |||||| |||||| | || ||||||| |
|
|
| T |
31157350 |
aattgttcccccctatatttaatctttctagtcgaagtagacatccaattgcatcagggagatagcttaga |
31157420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 31148336 - 31148486
Alignment:
| Q |
175 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
274 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||| || ||||||| ||| ||||||||| ||||| |||| |||||||| |||||||||| ||||||| |
|
|
| T |
31148336 |
gtagcaaaaggaagttgaggcaacgatttcaacaacttacaatgctgcaagtttaaatatgcaagtctggatagcttcctaaggctaggtaccgtcacaa |
31148435 |
T |
|
| Q |
275 |
aatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg |
325 |
Q |
| |
|
||| ||||||| ||| ||||||||||||||||||| |||||| | |||||| |
|
|
| T |
31148436 |
aattgtttccccctagatttaatctttctagccaacgtaaacgtccaattg |
31148486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 175 - 296
Target Start/End: Complemental strand, 31504153 - 31504032
Alignment:
| Q |
175 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
274 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
31504153 |
gtaggagaaggaagaacaggcaaagattccaacagtttgcaatgctccaagtttaaatatacaagtttggaaagctccctcaggctaggtactgtcacaa |
31504054 |
T |
|
| Q |
275 |
aatcgtttcccgctaaatttaa |
296 |
Q |
| |
|
||| |||||| |||| ||||| |
|
|
| T |
31504053 |
aattatttccccctaagtttaa |
31504032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 31478968 - 31478818
Alignment:
| Q |
175 |
gtaggaaaaggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaa |
274 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||| ||||||| |||||| ||||||| |||||||| |
|
|
| T |
31478968 |
gtaggagaaggaagtacaggcaaagatttcaacagcttgcaatgctctaagcttaaatatacaagttttgaaagctccctcagactaggtactgtcacaa |
31478869 |
T |
|
| Q |
275 |
aatcgtttcccgctaaatttaatctttctagccaatgtaaacattcaattg |
325 |
Q |
| |
|
||| ||||||| ||||||||||| ||||| ||||| || |||| |||||| |
|
|
| T |
31478868 |
aattgtttccccctaaatttaatgcttctaaccaatatagacatccaattg |
31478818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 31479123 - 31479029
Alignment:
| Q |
32 |
ggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct |
126 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||| ||||||||| || ||| ||||| | ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
31479123 |
ggtttgcctgaatgaattgtatcatccatgaaaatgtcatgctactccaacgttccgtttcacccaatttaggacagttgaaaatgaacaatcct |
31479029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 31472668 - 31472565
Alignment:
| Q |
29 |
gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaa---tgttccctctcacccaattttggacagttgaaaatgagcaatcc |
125 |
Q |
| |
|
|||| ||||||| ||||| |||| |||||||| ||| ||||||| | ||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
31472668 |
gtggatttgcctgaatgagttgtatcatccatgaaaatgtcatgttagtgcaacaatgttccctctcacccaaattaggacagttgaaaatgagcaatcc |
31472569 |
T |
|
| Q |
126 |
tgta |
129 |
Q |
| |
|
|||| |
|
|
| T |
31472568 |
tgta |
31472565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 31504311 - 31504211
Alignment:
| Q |
29 |
gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcctgt |
128 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| |||||| || || | |||||||||| ||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
31504311 |
gtgggtttgccttaatgaattgtatcatccatgaaaatgtcattctaatgtagcattccctctcatccaatttaggacagttgaaaataagcaatcttgt |
31504212 |
T |
|
| Q |
129 |
a |
129 |
Q |
| |
|
| |
|
|
| T |
31504211 |
a |
31504211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 31157122 - 31157213
Alignment:
| Q |
35 |
ttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatgagcaatcct |
126 |
Q |
| |
|
|||||| ||| |||||| |||||||| ||| || |||||| |||||| ||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
31157122 |
ttgcctgaatcaattgtatcatccatgaaaatgccatgctattgcaatcttcactctcacccaatttaggacagttgaaaatgaccaatcct |
31157213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 31472462 - 31472411
Alignment:
| Q |
226 |
tttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaat |
277 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
31472462 |
tttaaatatacaagtttggaaagctccctcgggctaggtactgtcacaaaat |
31472411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 31491725 - 31491627
Alignment:
| Q |
211 |
ttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaa |
309 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| | ||| | | || |||||||| ||||| ||||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
31491725 |
ttgcaatgctccaaatttaagtattcaagtctagaatgatcccggaggctaggcaatgtgacaaaattgtttccccttaaatttagtctttctaaccaa |
31491627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 31526524 - 31526574
Alignment:
| Q |
259 |
ctaggtaatgtcacaaaatcgtttcccgctaaatttaatctttctagccaa |
309 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
31526524 |
ctaggcaatgtcacaaaattgtttccccctaaatttaatctttctaaccaa |
31526574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 31148178 - 31148267
Alignment:
| Q |
29 |
gtgggtttgccttaatgaattgtttcatccataaaagtgtcatgctcctgcaatgttccctctcacccaattttggacagttgaaaatga |
118 |
Q |
| |
|
||||||| ||| ||||| |||| |||||||| ||| | ||||||| | ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
31148178 |
gtgggttcgcccgaatgagttgtatcatccatgaaaatatcatgctattccaacattccctctcacccaatttaggacagttgaaaatga |
31148267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 31017634 - 31017706
Alignment:
| Q |
228 |
taaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgtttcccgctaaatttaatctt |
300 |
Q |
| |
|
||||||||||||||| ||||||| ||| || ||||| | |||||||||| |||||||| |||| ||||||| |
|
|
| T |
31017634 |
taaatatacaagtttagaaagctccctgagactaggcagagtcacaaaattgtttcccgataaaactaatctt |
31017706 |
T |
|
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Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 6785354 - 6785236
Alignment:
| Q |
183 |
aggaagttgaggcaaagattccaacaatttgcaatgctccaaatttaaatatacaagtttggaaagcttcctcaggctaggtaatgtcacaaaatcgttt |
282 |
Q |
| |
|
|||||| | ||||||| ||| |||||| ||||| || ||||| ||||||||||| ||||||||||||| | |||||||||| ||||||||||||| |||| |
|
|
| T |
6785354 |
aggaagatcaggcaaatatttcaacaacttgcagtgatccaagtttaaatatacgagtttggaaagctccttcaggctaggcaatgtcacaaaatggttt |
6785255 |
T |
|
| Q |
283 |
cccgctaaatttaatcttt |
301 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
6785254 |
ccccctaaatttaatcttt |
6785236 |
T |
|
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