View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15399_low_8 (Length: 449)

Name: NF15399_low_8
Description: NF15399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15399_low_8
NF15399_low_8
[»] chr1 (23 HSPs)
chr1 (17-140)||(9591008-9591130)
chr1 (194-297)||(9590822-9590927)
chr1 (295-406)||(44644511-44644621)
chr1 (295-406)||(44647869-44647979)
chr1 (295-402)||(40800543-40800649)
chr1 (298-402)||(30385304-30385407)
chr1 (240-297)||(45010843-45010900)
chr1 (240-296)||(6758551-6758607)
chr1 (260-297)||(26674264-26674301)
chr1 (265-297)||(11324511-11324543)
chr1 (265-297)||(11482532-11482564)
chr1 (333-396)||(15382619-15382682)
chr1 (242-297)||(31998267-31998322)
chr1 (299-391)||(3485367-3485458)
chr1 (295-403)||(11641223-11641330)
chr1 (295-387)||(28030837-28030928)
chr1 (240-294)||(39216108-39216162)
chr1 (240-294)||(42761458-42761512)
chr1 (265-297)||(1597219-1597251)
chr1 (331-403)||(24321258-24321330)
chr1 (331-403)||(27984555-27984627)
chr1 (336-396)||(31049513-31049573)
chr1 (331-391)||(31444934-31444994)
[»] chr4 (14 HSPs)
chr4 (295-406)||(38721333-38721443)
chr4 (331-408)||(29051678-29051755)
chr4 (295-387)||(3036995-3037086)
chr4 (295-403)||(7614614-7614721)
chr4 (236-297)||(5816540-5816601)
chr4 (333-402)||(19897639-19897708)
chr4 (295-402)||(27407775-27407881)
chr4 (254-297)||(3511728-3511771)
chr4 (260-297)||(4484099-4484136)
chr4 (240-297)||(36072575-36072632)
chr4 (267-296)||(37306931-37306960)
chr4 (265-297)||(19878364-19878396)
chr4 (331-399)||(25101723-25101791)
chr4 (237-297)||(35425254-35425314)
[»] chr2 (15 HSPs)
chr2 (295-395)||(43444696-43444795)
chr2 (295-403)||(9006940-9007047)
chr2 (295-387)||(11931706-11931797)
chr2 (240-296)||(41805279-41805335)
chr2 (265-299)||(33555207-33555241)
chr2 (295-402)||(7799847-7799953)
chr2 (240-296)||(32143485-32143541)
chr2 (267-297)||(5762533-5762563)
chr2 (295-402)||(44563153-44563260)
chr2 (266-299)||(19951521-19951554)
chr2 (260-297)||(23377967-23378004)
chr2 (331-403)||(22839118-22839190)
chr2 (265-297)||(26003513-26003545)
chr2 (242-294)||(37182897-37182949)
chr2 (265-297)||(38465867-38465899)
[»] chr7 (15 HSPs)
chr7 (331-403)||(6766741-6766813)
chr7 (295-402)||(47525992-47526099)
chr7 (331-402)||(35570245-35570316)
chr7 (295-387)||(4131659-4131750)
chr7 (331-387)||(42662202-42662257)
chr7 (265-296)||(24280900-24280931)
chr7 (331-386)||(36515855-36515910)
chr7 (331-402)||(46322156-46322227)
chr7 (331-402)||(49110661-49110732)
chr7 (331-405)||(2952419-2952493)
chr7 (267-297)||(41095224-41095254)
chr7 (265-294)||(5691557-5691586)
chr7 (240-297)||(31813416-31813473)
chr7 (332-396)||(8656080-8656144)
chr7 (265-297)||(41888807-41888839)
[»] chr5 (14 HSPs)
chr5 (331-402)||(24916439-24916510)
chr5 (295-398)||(32017217-32017319)
chr5 (231-297)||(5984061-5984127)
chr5 (292-402)||(24992291-24992400)
chr5 (266-297)||(780736-780767)
chr5 (298-386)||(12456799-12456886)
chr5 (266-296)||(32398082-32398112)
chr5 (295-403)||(33387219-33387326)
chr5 (240-297)||(10437643-10437700)
chr5 (265-297)||(3100483-3100515)
chr5 (265-297)||(11795766-11795798)
chr5 (334-402)||(12007826-12007894)
chr5 (240-296)||(14772625-14772681)
chr5 (331-387)||(18598559-18598615)
[»] chr3 (13 HSPs)
chr3 (295-391)||(15332962-15333057)
chr3 (331-388)||(3430465-3430522)
chr3 (240-297)||(47334647-47334704)
chr3 (295-403)||(39866297-39866404)
chr3 (332-402)||(48334712-48334782)
chr3 (240-297)||(10872750-10872807)
chr3 (240-297)||(12744906-12744963)
chr3 (268-297)||(23783333-23783362)
chr3 (358-403)||(23940580-23940625)
chr3 (331-379)||(15664136-15664184)
chr3 (331-391)||(22516030-22516090)
chr3 (265-297)||(26121569-26121601)
chr3 (331-387)||(44561799-44561855)
[»] chr6 (9 HSPs)
chr6 (240-297)||(11637175-11637232)
chr6 (295-387)||(15337503-15337594)
chr6 (295-391)||(5495260-5495355)
chr6 (295-392)||(28477763-28477859)
chr6 (295-387)||(29790221-29790312)
chr6 (240-297)||(13506839-13506896)
chr6 (331-392)||(29693893-29693954)
chr6 (331-403)||(4147930-4148002)
chr6 (265-297)||(11746306-11746338)
[»] chr8 (12 HSPs)
chr8 (298-403)||(33700232-33700337)
chr8 (240-297)||(10117048-10117105)
chr8 (238-296)||(34326324-34326382)
chr8 (240-297)||(11335645-11335702)
chr8 (264-297)||(24017747-24017780)
chr8 (240-297)||(24287790-24287847)
chr8 (265-297)||(2805891-2805923)
chr8 (265-297)||(3225810-3225842)
chr8 (331-403)||(6414156-6414228)
chr8 (347-387)||(9632170-9632210)
chr8 (254-294)||(34326264-34326304)
chr8 (245-293)||(40640360-40640408)
[»] scaffold0009 (2 HSPs)
scaffold0009 (292-387)||(217028-217123)
scaffold0009 (265-297)||(146046-146078)
[»] scaffold0225 (1 HSPs)
scaffold0225 (295-385)||(8989-9078)
[»] scaffold0029 (1 HSPs)
scaffold0029 (295-385)||(138186-138275)
[»] scaffold0041 (1 HSPs)
scaffold0041 (267-297)||(108042-108072)
[»] scaffold0036 (1 HSPs)
scaffold0036 (265-297)||(89676-89708)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 9591130 - 9591008
Alignment:
Q  17 aatatattgaaataacatgtaagtttattaatatattcacaataaatgattcatttaatttttgactaaataaatgattcatttataaaaattgaccatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9591130 aatatattgaaataacatgtaagtttattaatatattcacaataa-tgattcatttaatttttgactaaataaatgattcatttataaaaattgaccatt 9591032  T
Q  117 ttgatattgacatttttgactaaa 140  Q
    ||||||||||||||||||||||||    
T  9591031 ttgatattgacatttttgactaaa 9591008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 9590927 - 9590822
Alignment:
Q  194 cattgtaaatcgaaatattcgatttcttttttataaaatacaatct--ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatg 291  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  9590927 cattgtaaatcgaaatattcgatttcttttttataaaatacactcttcggtcactattacacgtaaacctttctattttaaattcattcaattaatgatg 9590828  T
Q  292 tatatg 297  Q
    ||||||    
T  9590827 tatatg 9590822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 295 - 406
Target Start/End: Original strand, 44644511 - 44644621
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| |||||| |||       |||| ||||||||||| |||| |||||||||||||| |||  ||||||||||||||||||||||    
T  44644511 atgctaacatttgtatttatatatttgttaaaaaa-tatgatcaaagtaagtcatgtgaataatacacattgaaaaaatgcgacatgtattttaaaatgg 44644609  T
Q  395 agggagtatcat 406  Q
    ||||||||||||    
T  44644610 agggagtatcat 44644621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 406
Target Start/End: Original strand, 44647869 - 44647979
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| |||||| |||       |||| ||||| ||||| |||| |||||||||||||| |||  ||||||||||||||||||||||    
T  44647869 atgctaacatttgtatttatatatttgttaaaaaa-tatgatcaaaataagtcatgtgaataatacacattgaaaaaatgcgacatgtattttaaaatgg 44647967  T
Q  395 agggagtatcat 406  Q
    ||||||||||||    
T  44647968 agggagtatcat 44647979  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 40800543 - 40800649
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    ||||||||||||||||| | |||||||||       ||||||||||||||||||||| | |||| ||||||||||| || |||||| |||||| ||||||    
T  40800543 atgctaacatttgtattat-atattagttaaaaaaatatggtcaaagtaagttatgtgattaatgcacattgtaaaattacgacatatattttgaaatgg 40800641  T
Q  395 agggagta 402  Q
    || |||||    
T  40800642 agagagta 40800649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 30385304 - 30385407
Alignment:
Q  298 ctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagg 397  Q
    ||||||||||||||| ||||||||||       ||||||||||||||  ||||| |||| | |||||| |||| ||||||||||||||||||||| || |    
T  30385304 ctaacatttgtatttatatattagttaaaaaa-tatggtcaaagtaaactatgtgaatagtgcacattataaaattgcgacatgtattttaaaatagatg 30385402  T
Q  398 gagta 402  Q
    |||||    
T  30385403 gagta 30385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 45010843 - 45010900
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | |||||  ||| |||||||||||||||||||||||||||||||||    
T  45010843 ggtcactattataagcaaaattttgcattttaaattcattcaattaatgatgtatatg 45010900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 6758551 - 6758607
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatat 296  Q
    ||||||||||| | ||||| |||| ||||||| ||||||||||||||||||||||||    
T  6758551 ggtcactattataagcaaaactttgcattttacattcattcaattaatgatgtatat 6758607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 26674301 - 26674264
Alignment:
Q  260 ctttccattttaaattcattcaattaatgatgtatatg 297  Q
    |||| |||||||||||||||||||||||||||||||||    
T  26674301 ctttgcattttaaattcattcaattaatgatgtatatg 26674264  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 11324543 - 11324511
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    |||||||||||||||||||||||||||||||||    
T  11324543 cattttaaattcattcaattaatgatgtatatg 11324511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 11482564 - 11482532
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    |||||||||||||||||||||||||||||||||    
T  11482564 cattttaaattcattcaattaatgatgtatatg 11482532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 15382619 - 15382682
Alignment:
Q  333 tggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggag 396  Q
    |||||| |||||||||||| |||| |  |||||||||| |||||||||||||||| ||| ||||    
T  15382619 tggtcagagtaagttatgtgaatagtgtacattgtaaaattgcgacatgtattttgaaacggag 15382682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 31998322 - 31998267
Alignment:
Q  242 tcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||| | ||||| |||| ||||||| ||||||||| |||||||||||||||    
T  31998322 tcactattataagcaaaactttgcattttagattcattcatttaatgatgtatatg 31998267  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 391
Target Start/End: Original strand, 3485367 - 3485458
Alignment:
Q  299 taacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaa 391  Q
    |||||||||||||| ||||||||||       |||| |||||||||||||||  |||| | || |||||||| || |||||||||||||||||    
T  3485367 taacatttgtatttatatattagttaaaaaa-tatgatcaaagtaagttatgcgaatagtgcatattgtaaaattacgacatgtattttaaaa 3485458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 11641223 - 11641330
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    ||||||| |||||||||| ||||||||||       |||||||||||||||| | || |||| | ||||||| |||  |  |||||||||||| ||||||    
T  11641223 atgctaatatttgtatttatatattagttaaaaag-tatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttgaaatgg 11641321  T
Q  395 agggagtat 403  Q
    |||||||||    
T  11641322 agggagtat 11641330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 28030837 - 28030928
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    |||||||||||||||||| ||| ||||||       |||||||||| ||||| ||||||||||| ||||||| |||  ||| |||||||||||    
T  28030837 atgctaacatttgtatttatatgttagttaaaaag-tatggtcaaaataagtcatgtaaataatgcacattgcaaaaatgcaacatgtatttt 28030928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 39216108 - 39216162
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtat 294  Q
    ||||||||||| | ||||| |||| ||||||| | ||||||||||||||||||||    
T  39216108 ggtcactattataagcaaaactttgcattttagactcattcaattaatgatgtat 39216162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 42761458 - 42761512
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtat 294  Q
    ||||| ||||| | ||||| |||| ||||||| ||||||||||||||||||||||    
T  42761458 ggtcattattataagcaaaactttacattttagattcattcaattaatgatgtat 42761512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 1597219 - 1597251
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| |||||||||||||||||||||    
T  1597219 cattttaaatttattcaattaatgatgtatatg 1597251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 24321330 - 24321258
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtat 403  Q
    |||||||||||||| | | || |||| | ||||||| |||  | ||||||||||||||||| |||||||||||    
T  24321330 tatggtcaaagtaaatcaagtgaatagtgcacattgcaaaaattcgacatgtattttaaaacggagggagtat 24321258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 27984627 - 27984555
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtat 403  Q
    |||||||||||||||  |||| |||| | ||  ||||||| ||| |||||||||||||||| ||| |||||||    
T  27984627 tatggtcaaagtaagcaatgtgaatagtgcatgttgtaaaattgtgacatgtattttaaaacggatggagtat 27984555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 31049573 - 31049513
Alignment:
Q  336 tcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggag 396  Q
    ||||| |||||||||| |||| | || || ||||| ||||||||||||||||||| |||||    
T  31049573 tcaaaataagttatgttaatagtgcatatcgtaaaattgcgacatgtattttaaagtggag 31049513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 31444994 - 31444934
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaa 391  Q
    ||||||||| ||| | |||| ||||||| |||| |||||| ||| ||||||||||||||||    
T  31444994 tatggtcaaggtacgctatgcaaataatgcacagtgtaaaattgtgacatgtattttaaaa 31444934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 406
Target Start/End: Complemental strand, 38721443 - 38721333
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| |||||| |||       |||| ||||| ||||| |||| |||||||||||||| |||  ||||||||||||||||||||||    
T  38721443 atgctaacatttgtatttatatatttgttaaaaaa-tatgatcaaaataagtcatgtgaataatacacattgaaaaaatgcgacatgtattttaaaatgg 38721345  T
Q  395 agggagtatcat 406  Q
    ||||||||||||    
T  38721344 agggagtatcat 38721333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 29051755 - 29051678
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtatcatat 408  Q
    ||||||||||||||||||||| ||||||  | |||||||| |||| ||||||||||||||| ||| | ||||| ||||    
T  29051755 tatggtcaaagtaagttatgtgaataatgtatattgtaaaattgcaacatgtattttaaaacggatgtagtattatat 29051678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 3037086 - 3036995
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    ||||||| |||||||||| ||||||||||       |||||||||||||||| |||| |||| ||||||||||| | || |||||||||||||    
T  3037086 atgctaatatttgtatttatatattagttaaaaag-tatggtcaaagtaagtcatgtgaatagtacacattgtataattacgacatgtatttt 3036995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 7614721 - 7614614
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| ||||||||||       |||||||||| ||||| |||| | ||||| | |||||||| || ||||||||||||| ||| ||    
T  7614721 atgctaacatttgtatttatatattagttaaaaaa-tatggtcaaaataagtcatgtgattaatatatattgtaaaattacgacatgtattttgaaacgg 7614623  T
Q  395 agggagtat 403  Q
    | |||||||    
T  7614622 atggagtat 7614614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 5816540 - 5816601
Alignment:
Q  236 atctggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| ||||||| | ||||| ||||  |||||||||||||| |||||||||||||||||    
T  5816540 atctggttactattataagcaaaactttgtattttaaattcatttaattaatgatgtatatg 5816601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 402
Target Start/End: Complemental strand, 19897708 - 19897639
Alignment:
Q  333 tggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagta 402  Q
    ||||||||||||||||||| |||| |  |||||||||| |||||||| ||||||| ||| | ||||||||    
T  19897708 tggtcaaagtaagttatgtgaatagtgtacattgtaaaattgcgacaagtattttgaaacgaagggagta 19897639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 27407775 - 27407881
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    ||||||| |||||||||| ||||||||||       || |||||||||||||||||| |||| | |||| || |||  |||| |||||||||| ||||||    
T  27407775 atgctaatatttgtatttatatattagttaaaaag-tagggtcaaagtaagttatgtgaatagttcacactgcaaaaatgcgtcatgtattttgaaatgg 27407873  T
Q  395 agggagta 402  Q
    ||||||||    
T  27407874 agggagta 27407881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 3511728 - 3511771
Alignment:
Q  254 gcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||    
T  3511728 gcaaaactttacattttagattcattcaattaatgatgtatatg 3511771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 4484099 - 4484136
Alignment:
Q  260 ctttccattttaaattcattcaattaatgatgtatatg 297  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  4484099 ctttgcattttagattcattcaattaatgatgtatatg 4484136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 36072575 - 36072632
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | |||||  ||| ||||||| |||||||||||| ||||||||||||    
T  36072575 ggtcactattataagcaaaattttgcattttagattcattcaatttatgatgtatatg 36072632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 296
Target Start/End: Complemental strand, 37306960 - 37306931
Alignment:
Q  267 ttttaaattcattcaattaatgatgtatat 296  Q
    ||||||||||||||||||||||||||||||    
T  37306960 ttttaaattcattcaattaatgatgtatat 37306931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 19878396 - 19878364
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||||||| |||||||||||||||||    
T  19878396 cattttaaattcatttaattaatgatgtatatg 19878364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 25101791 - 25101723
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggaggga 399  Q
    |||||||||| ||| | || |||||||||||||||| |||  ||| ||||||||||| |||| ||||||    
T  25101791 tatggtcaaaataaatcatataaataatacacattgcaaaaatgcaacatgtattttgaaatagaggga 25101723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 35425254 - 35425314
Alignment:
Q  237 tctggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    |||||||| ||||| | ||||| ||||  |||||| ||||||||| |||||||||||||||    
T  35425254 tctggtcattattataagcaaaactttaaattttagattcattcatttaatgatgtatatg 35425314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 43444696 - 43444795
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| ||||||||||       ||||||||||| || |||||| |||||| ||||||||||| |||||||||||||||| ||||||    
T  43444696 atgctaacatttgtatttatatattagttaaaaaa-tatggtcaaagaaaattatgtgaataatgcacattgtaaaattgcgacatgtattttgaaatgg 43444794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 9006940 - 9007047
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| || |||||||       ||||||||||||||| ||  | |||||| ||||||||||| |||||||||||||||| ||||||    
T  9006940 atgctaacatttgtatttataaattagttaaaaaa-tatggtcaaagtaagctacatgaataatgcacattgtaaaattgcgacatgtattttgaaatgg 9007038  T
Q  395 agggagtat 403  Q
    | |||||||    
T  9007039 atggagtat 9007047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 11931797 - 11931706
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    |||||||||||||||||| ||||||||||       ||||||||||||||||||| | |||||| || |||||||| ||||||||||||||||    
T  11931797 atgctaacatttgtatttatatattagttaaaaaa-tatggtcaaagtaagttatatgaataatgcatattgtaaaattgcgacatgtatttt 11931706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 41805279 - 41805335
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatat 296  Q
    ||||||||||| | |||||  ||| ||||||||||||||||||||||||||||||||    
T  41805279 ggtcactattataagcaaaattttgcattttaaattcattcaattaatgatgtatat 41805335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 33555207 - 33555241
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatgct 299  Q
    |||||||||||||||||||||||||||||||||||    
T  33555207 cattttaaattcattcaattaatgatgtatatgct 33555241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 402
Target Start/End: Complemental strand, 7799953 - 7799847
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| ||||||||||       || ||||||||||||| |||| |||| | ||||||| |||  ||||||||||||||| ||| |     
T  7799953 atgctaacatttgtatttatatattagttaaaaag-tagggtcaaagtaagtcatgtgaatagtgcacattgcaaaaatgcgacatgtattttgaaacgt 7799855  T
Q  395 agggagta 402  Q
    ||||||||    
T  7799854 agggagta 7799847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 32143541 - 32143485
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatat 296  Q
    ||||||| ||| | ||||| |||| ||||||||||||||||||||||||| ||||||    
T  32143541 ggtcactgttataagcaaaactttacattttaaattcattcaattaatgaagtatat 32143485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 297
Target Start/End: Original strand, 5762533 - 5762563
Alignment:
Q  267 ttttaaattcattcaattaatgatgtatatg 297  Q
    |||||||||||||||||||||||||||||||    
T  5762533 ttttaaattcattcaattaatgatgtatatg 5762563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 44563153 - 44563260
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||| ||||||| ||||||| ||       |||| |||||||||||||| | |||| | || ||| |||| |||||||||||| ||||||| ||    
T  44563153 atgctaacatatgtatttatatattaattaaaaaaatatgatcaaagtaagttatatgaatagtgcatattataaaattgcgacatgtaatttaaaacgg 44563252  T
Q  395 agggagta 402  Q
    | ||||||    
T  44563253 atggagta 44563260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 19951554 - 19951521
Alignment:
Q  266 attttaaattcattcaattaatgatgtatatgct 299  Q
    |||||| |||||||||||||||||||||||||||    
T  19951554 attttatattcattcaattaatgatgtatatgct 19951521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 23377967 - 23378004
Alignment:
Q  260 ctttccattttaaattcattcaattaatgatgtatatg 297  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  23377967 ctttgcattttagattcattcaattaatgatgtatatg 23378004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 22839118 - 22839190
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtat 403  Q
    ||||||||||||||||||||| |||| | ||||||| ||| |||  | || |||||| ||||||| |||||||    
T  22839118 tatggtcaaagtaagttatgtgaatagtgcacattgcaaatttgtaaaatatattttgaaatggaaggagtat 22839190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 26003545 - 26003513
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| |||||||||||||||||||||||||    
T  26003545 cattttagattcattcaattaatgatgtatatg 26003513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 37182949 - 37182897
Alignment:
Q  242 tcactattacacgcaaacctttccattttaaattcattcaattaatgatgtat 294  Q
    ||||||||| |||||||  ||| ||||||||||||||||| | ||||||||||    
T  37182949 tcactattatacgcaaaaatttacattttaaattcattcattaaatgatgtat 37182897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 38465899 - 38465867
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| |||||||||||||||||||||||||    
T  38465899 cattttagattcattcaattaatgatgtatatg 38465867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 6766741 - 6766813
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtat 403  Q
    |||||||||| |||||||||| |||||| || |||||||| |||||||||||||||| ||| |||||||||||    
T  6766741 tatggtcaaaataagttatgtgaataatgcagattgtaaaattgcgacatgtattttgaaacggagggagtat 6766813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 47525992 - 47526099
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| ||||||||||       |||| |||||||||| || ||||||||| || | |||||| ||||||||| |||||||||| ||    
T  47525992 atgctaacatttgtatttatatattagttaaaaaaatatgatcaaagtaagctaggtaaataatgcataatgtaaaattgcgacatatattttaaaacgg 47526091  T
Q  395 agggagta 402  Q
    | ||||||    
T  47526092 atggagta 47526099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 35570245 - 35570316
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagta 402  Q
    ||||||||||||||||| ||| |||| | ||||||||||| |||||||||||||||| ||| |||| |||||    
T  35570245 tatggtcaaagtaagttttgtgaatagtgcacattgtaaaattgcgacatgtattttgaaacggagtgagta 35570316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 4131659 - 4131750
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    |||||||| ||||||||| ||||||||||       |||||| |||||||||||||| |||| || |||||||||| ||||||||| ||||||    
T  4131659 atgctaacttttgtatttatatattagttaaaaaa-tatggttaaagtaagttatgtgaatagtatacattgtaaaattgcgacatatatttt 4131750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 42662257 - 42662202
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    |||||||||||||||  |||| |||||||||||||| ||| ||||||||||||||||    
T  42662257 tatggtcaaagtaaga-atgtgaataatacacattgcaaaattgcgacatgtatttt 42662202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 296
Target Start/End: Complemental strand, 24280931 - 24280900
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatat 296  Q
    ||||||||||||||||||||||||||||||||    
T  24280931 cattttaaattcattcaattaatgatgtatat 24280900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 36515910 - 36515855
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattt 386  Q
    |||||| |||||||||| ||| |||| |||||||||| || |||||||||||||||    
T  36515910 tatggttaaagtaagttgtgtgaatagtacacattgttaaattgcgacatgtattt 36515855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 46322156 - 46322227
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagta 402  Q
    |||||||||||||||| | || |||||| ||||||| |||  |  |||||||||||| ||||||||||||||    
T  46322156 tatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttgaaatggagggagta 46322227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 49110661 - 49110732
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagta 402  Q
    |||||||||||||| | || | |||| |||||||| |||| ||| |||||||||||||||| ||| ||||||    
T  49110661 tatggtcaaagtaaatcatttgaatagtacacattataaaattgtgacatgtattttaaaacggatggagta 49110732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 405
Target Start/End: Complemental strand, 2952493 - 2952419
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtatca 405  Q
    ||||||||||||||| || || |||||| ||| ||||||| |||| ||| ||||||| ||| ||| |||||||||    
T  2952493 tatggtcaaagtaagctacgtgaataatgcacgttgtaaaattgcaacacgtattttgaaacggatggagtatca 2952419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 297
Target Start/End: Original strand, 41095224 - 41095254
Alignment:
Q  267 ttttaaattcattcaattaatgatgtatatg 297  Q
    |||||||||||||||||||||||||||||||    
T  41095224 ttttaaattcattcaattaatgatgtatatg 41095254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 294
Target Start/End: Complemental strand, 5691586 - 5691557
Alignment:
Q  265 cattttaaattcattcaattaatgatgtat 294  Q
    ||||||||||||||||||||||||||||||    
T  5691586 cattttaaattcattcaattaatgatgtat 5691557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 31813416 - 31813473
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| |  ||||  ||| ||||||| |||||||||||||||||||||||||    
T  31813416 ggtcactattataaacaaaaatttacattttagattcattcaattaatgatgtatatg 31813473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 8656144 - 8656080
Alignment:
Q  332 atggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggag 396  Q
    ||||| ||||||| |||||| |||| | ||||||||||| |||||  ||||||||||||| ||||    
T  8656144 atggtaaaagtaaattatgtgaatagtgcacattgtaaaattgcggtatgtattttaaaacggag 8656080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 41888839 - 41888807
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||||||||| |||||||||||||||    
T  41888839 cattttaaattcattcatttaatgatgtatatg 41888807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 402
Target Start/End: Original strand, 24916439 - 24916510
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagta 402  Q
    ||||||||||||||| ||||| |||| ||||||||||||| ||| |||||||||||| ||| ||| ||||||    
T  24916439 tatggtcaaagtaagctatgtgaatagtacacattgtaaaattgtgacatgtattttgaaacggatggagta 24916510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 32017319 - 32017217
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    |||||||||||||||||| ||||||||||       |||| |||||||||||||||| |||| | |||||  |||| ||||| |||||||||||||| ||    
T  32017319 atgctaacatttgtatttatatattagttaaaaaa-tatgatcaaagtaagttatgtgaatattgcacatcataaaattgcgtcatgtattttaaaacgg 32017221  T
Q  395 aggg 398  Q
    ||||    
T  32017220 aggg 32017217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 5984127 - 5984061
Alignment:
Q  231 atacaatctggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||| || ||||| ||||| | ||||| |||| ||||||| |||||||||||||||||||||||||    
T  5984127 atacattccggtcattattataagcaaaactttgcattttagattcattcaattaatgatgtatatg 5984061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 402
Target Start/End: Original strand, 24992291 - 24992400
Alignment:
Q  292 tatatgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaa 391  Q
    |||||||||| |||||||||| || |||||||       ||||||||||||||| ||||| |||| | |||||||||||  |  |||||||||||| |||    
T  24992291 tatatgctaatatttgtatttataaattagttaaaaaa-tatggtcaaagtaagctatgtgaatagtgcacattgtaaaactatgacatgtattttgaaa 24992389  T
Q  392 tggagggagta 402  Q
     ||||||||||    
T  24992390 cggagggagta 24992400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 297
Target Start/End: Complemental strand, 780767 - 780736
Alignment:
Q  266 attttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||||||||||||||||||||||||    
T  780767 attttaaattcattcaattaatgatgtatatg 780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 12456799 - 12456886
Alignment:
Q  298 ctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattt 386  Q
    ||||||||||||||| ||||||||||       |||| | ||||||||||||||||||| | ||||||||||| |||| | ||||||||    
T  12456799 ctaacatttgtatttgtatattagttaaaaaa-tatgattaaagtaagttatgtaaatagtgcacattgtaaaattgcaatatgtattt 12456886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 296
Target Start/End: Complemental strand, 32398112 - 32398082
Alignment:
Q  266 attttaaattcattcaattaatgatgtatat 296  Q
    |||||||||||||||||||||||||||||||    
T  32398112 attttaaattcattcaattaatgatgtatat 32398082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 33387326 - 33387219
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    ||||||| |||||||||| ||||||||||       ||| |||||||||||| | || |||| | ||||||| |||  |  |||||||||||||||||||    
T  33387326 atgctaatatttgtatttatatattagttaaaaag-tatagtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttaaaatgg 33387228  T
Q  395 agggagtat 403  Q
    |||||||||    
T  33387227 agggagtat 33387219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 10437643 - 10437700
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | | ||| ||||  |||||||||||||||||||| |||||||||||    
T  10437643 ggtcactattataagtaaaactttgtattttaaattcattcaattagtgatgtatatg 10437700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 3100515 - 3100483
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| |||||||||||||||||||||||||    
T  3100515 cattttagattcattcaattaatgatgtatatg 3100483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 11795766 - 11795798
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| |||||||||||||||||||||||||    
T  11795766 cattttagattcattcaattaatgatgtatatg 11795798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 402
Target Start/End: Original strand, 12007826 - 12007894
Alignment:
Q  334 ggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagta 402  Q
    ||||||| ||||| ||||||||| | |||| | ||||  ||||||||||||||| ||| ||||||||||    
T  12007826 ggtcaaattaagtcatgtaaatagtgcacaatataaaaatgcgacatgtattttgaaacggagggagta 12007894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 14772681 - 14772625
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatat 296  Q
    ||||||||||| | ||||| ||||  |||||| ||| ||||||||||||||||||||    
T  14772681 ggtcactattataagcaaaactttatattttagattaattcaattaatgatgtatat 14772625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 18598615 - 18598559
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    |||||||||||||| | |||| |||||| ||||||| |||  |||||||||||||||    
T  18598615 tatggtcaaagtaattcatgtcaataatgcacattgcaaaaatgcgacatgtatttt 18598559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 391
Target Start/End: Original strand, 15332962 - 15333057
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaa 391  Q
    |||||||||||||||||| ||||||||||       | ||||||||| ||| ||||| |||| | ||||||||||| ||||||||||||||||||||    
T  15332962 atgctaacatttgtatttatatattagttaaaaaatt-tggtcaaagcaagctatgtgaatagtgcacattgtaaaattgcgacatgtattttaaaa 15333057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 3430465 - 3430522
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttta 388  Q
    ||||||||||||||||||| |||||| | ||||||||||| |||| ||||||||||||    
T  3430465 tatggtcaaagtaagttatataaatagtgcacattgtaaaattgcaacatgtatttta 3430522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 47334647 - 47334704
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||| ||||| | ||||| ||||  ||||||||||||||||||||||||||||||||    
T  47334647 ggtcagtattataagcaaaactttgtattttaaattcattcaattaatgatgtatatg 47334704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 39866297 - 39866404
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatgg 394  Q
    ||||||| |||||||||| ||||||||||       |||||||||||||||| | || |||| | ||||||| |||  |  |||||||||||||||| ||    
T  39866297 atgctaatatttgtatttatatattagttaaaaag-tatggtcaaagtaagtcaagtgaatagtgcacattgcaaaaattggacatgtattttaaaacgg 39866395  T
Q  395 agggagtat 403  Q
    |||||||||    
T  39866396 agggagtat 39866404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 402
Target Start/End: Original strand, 48334712 - 48334782
Alignment:
Q  332 atggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagta 402  Q
    ||||| |||||||  ||||| ||||||  |||||||||| || ||| ||||||||||||| ||||||||||    
T  48334712 atggttaaagtaaactatgtgaataatgtacattgtaaaattacgagatgtattttaaaacggagggagta 48334782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 10872807 - 10872750
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | |||||  |||  |||||| |||||||||||||||||||||||||    
T  10872807 ggtcactattataagcaaaaatttatattttagattcattcaattaatgatgtatatg 10872750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 12744906 - 12744963
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | |||||   || ||||||| |||||||||||||||||||||||||    
T  12744906 ggtcactattataagcaaaaacttacattttagattcattcaattaatgatgtatatg 12744963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 297
Target Start/End: Original strand, 23783333 - 23783362
Alignment:
Q  268 tttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||||||||||||||||||||||    
T  23783333 tttaaattcattcaattaatgatgtatatg 23783362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 23940580 - 23940625
Alignment:
Q  358 tacacattgtaaacttgcgacatgtattttaaaatggagggagtat 403  Q
    ||||| ||||||| |||||||||||||||||||| |||| ||||||    
T  23940580 tacacgttgtaaaattgcgacatgtattttaaaacggagagagtat 23940625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 15664136 - 15664184
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgaca 379  Q
    |||| ||||| |||| |||||||||||| ||||||||||| ||||||||    
T  15664136 tatgatcaaattaagctatgtaaataatgcacattgtaaaattgcgaca 15664184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 22516090 - 22516030
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaa 391  Q
    ||||||||||||||| ||||| |||| |  ||| |||||| || |||||||||||||||||    
T  22516090 tatggtcaaagtaagctatgtgaatagtgtacactgtaaaattccgacatgtattttaaaa 22516030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 26121569 - 26121601
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| |||||||||||||||||||||||||    
T  26121569 cattttagattcattcaattaatgatgtatatg 26121601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 44561855 - 44561799
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    |||||||||||||||| |||| |||| | ||||||| |||| ||| |||||||||||    
T  44561855 tatggtcaaagtaagtcatgtgaatagtgcacattgcaaacatgcaacatgtatttt 44561799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 11637175 - 11637232
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | ||||| | || |||||||||||||||||||||||||||||||||    
T  11637175 ggtcactattataagcaaaacattacattttaaattcattcaattaatgatgtatatg 11637232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 15337594 - 15337503
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    ||||||| |||||||||| ||||||||||       ||||||||||||||||||||| |||||| || |||||||| ||| || |||||||||    
T  15337594 atgctaatatttgtatttatatattagttaaaaaa-tatggtcaaagtaagttatgtgaataatgcatattgtaaaattgtgaaatgtatttt 15337503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 391
Target Start/End: Complemental strand, 5495355 - 5495260
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaa 391  Q
    |||||||||||||||||| ||||||||||        ||| ||||| |||  |||||||||||| ||||| ||||| ||||||||| ||||||||||    
T  5495355 atgctaacatttgtatttatatattagttaaaaaac-atgatcaaaataaactatgtaaataatgcacatcgtaaaattgcgacatatattttaaaa 5495260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 392
Target Start/End: Complemental strand, 28477859 - 28477763
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaat 392  Q
    ||||||| |||||||||| ||||||||||       ||||||||||| |||| |||| |||| ||||||||| ||| ||| |||||||||||| ||||    
T  28477859 atgctaatatttgtatttatatattagttaaaaat-tatggtcaaagcaagtcatgtgaatagtacacattgcaaaattgtgacatgtattttgaaat 28477763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 29790312 - 29790221
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    ||||||| |||||||||| ||||||||||       ||||||| |||||||| |||| |||| || |||||| ||| ||||||||||||||||    
T  29790312 atgctaatatttgtatttatatattagttaaaaat-tatggtccaagtaagtcatgtgaatagtatacattgcaaaattgcgacatgtatttt 29790221  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 13506839 - 13506896
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | |||||  ||| ||| ||||||||||| |||||||||||||||||    
T  13506839 ggtcactattataagcaaaagtttacatcttaaattcatttaattaatgatgtatatg 13506896  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 29693954 - 29693893
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaat 392  Q
    ||||||||||| |||| |||| |||| ||||||||| ||| ||| |||||||||||| ||||    
T  29693954 tatggtcaaagcaagtcatgtgaatagtacacattgcaaaattgtgacatgtattttgaaat 29693893  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 4148002 - 4147930
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtat 403  Q
    |||||||||||||||| | || |||||| ||||||| |||  |  |||||||||||| ||| |||||||||||    
T  4148002 tatggtcaaagtaagtcaagtgaataatgcacattgcaaaaattggacatgtattttgaaacggagggagtat 4147930  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 11746338 - 11746306
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| |||||||||||||||||||||||||    
T  11746338 cattttagattcattcaattaatgatgtatatg 11746306  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 403
Target Start/End: Original strand, 33700232 - 33700337
Alignment:
Q  298 ctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaactt-gcgacatgtattttaaaatggag 396  Q
    ||||||||||||||| ||||||||||       ||||||||||||||| ||||| |||| | | ||||||||| || |||||||||||||| ||| ||||    
T  33700232 ctaacatttgtatttatatattagttaaaaaa-tatggtcaaagtaagctatgtgaatagtgcgcattgtaaattttgcgacatgtattttgaaacggag 33700330  T
Q  397 ggagtat 403  Q
    |||||||    
T  33700331 ggagtat 33700337  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 10117105 - 10117048
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | |||||  ||| ||||||| |||||||||||||||||||||||||    
T  10117105 ggtcactattataagcaaaaatttacattttagattcattcaattaatgatgtatatg 10117048  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 34326382 - 34326324
Alignment:
Q  238 ctggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatat 296  Q
    ||||||||||||| | | |||  ||| ||||||| ||||||||||||||||||||||||    
T  34326382 ctggtcactattataagtaaaattttgcattttacattcattcaattaatgatgtatat 34326324  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 11335702 - 11335645
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||| ||||| | ||||| |||| ||||||| ||||||||||||||| |||||||||    
T  11335702 ggtcattattataagcaaaactttgcattttagattcattcaattaataatgtatatg 11335645  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 24017747 - 24017780
Alignment:
Q  264 ccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||||| ||||||||||||||||||||    
T  24017747 ccattttaaattccttcaattaatgatgtatatg 24017780  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 24287790 - 24287847
Alignment:
Q  240 ggtcactattacacgcaaacctttccattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| | ||||| |||| ||||||| ||||||||| | |||||||||||||    
T  24287790 ggtcactattataagcaaaactttgcattttagattcattcattaaatgatgtatatg 24287847  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 2805923 - 2805891
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||||||||||||||| |||||||||    
T  2805923 cattttaaattcattcaattaataatgtatatg 2805891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 3225810 - 3225842
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| |||||||||||||||||||||    
T  3225810 cattttaaatttattcaattaatgatgtatatg 3225842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 6414156 - 6414228
Alignment:
Q  331 tatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtattttaaaatggagggagtat 403  Q
    |||||||||||||||| |||| |||| | ||||||| |||  || ||||| |||||||||| ||| |||||||    
T  6414156 tatggtcaaagtaagtcatgtgaatagtgcacattgcaaaaatgtgacatttattttaaaacggatggagtat 6414228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 9632210 - 9632170
Alignment:
Q  347 tatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    ||||| |||| ||||||||||||| ||||||||||||||||    
T  9632210 tatgtgaatagtacacattgtaaaattgcgacatgtatttt 9632170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 34326264 - 34326304
Alignment:
Q  254 gcaaacctttccattttaaattcattcaattaatgatgtat 294  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  34326264 gcaaaactttgcattttagattcattcaattaatgatgtat 34326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 40640408 - 40640360
Alignment:
Q  245 ctattacacgcaaacctttccattttaaattcattcaattaatgatgta 293  Q
    |||||| | ||||| |||| ||||||| |||||||||||||||||||||    
T  40640408 ctattataagcaaaactttgcattttagattcattcaattaatgatgta 40640360  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 217028 - 217123
Alignment:
Q  292 tatatgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatttt 387  Q
    ||||||||||||||||||||| ||||||| ||       |||||||||  |||||||||  |||| | ||||||||||| ||||||| ||||||||    
T  217028 tatatgctaacatttgtatttatatattacttaaaaaaatatggtcaacataagttatgagaatattgcacattgtaaaattgcgacttgtatttt 217123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 146078 - 146046
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||| |||||||||||||||||||||||||    
T  146078 cattttagattcattcaattaatgatgtatatg 146046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 8989 - 9078
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatt 385  Q
    |||||||||||||||||| ||||||||||       | ||||||||||||||||||| |||||| || |||||||| ||| || |||||||    
T  8989 atgctaacatttgtatttatatattagttaaaaaa-tgtggtcaaagtaagttatgtgaataatgcatattgtaaaattgtgaaatgtatt 9078  T

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Target: scaffold0029 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 138186 - 138275
Alignment:
Q  295 atgctaacatttgtatttttatattagttnnnnnnntatggtcaaagtaagttatgtaaataatacacattgtaaacttgcgacatgtatt 385  Q
    |||||||||||||||||| ||||||||||       | ||||||||||||||||||| |||||| || |||||||| ||| || |||||||    
T  138186 atgctaacatttgtatttatatattagttaaaaaa-tgtggtcaaagtaagttatgtgaataatgcatattgtaaaattgtgaaatgtatt 138275  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 297
Target Start/End: Complemental strand, 108072 - 108042
Alignment:
Q  267 ttttaaattcattcaattaatgatgtatatg 297  Q
    |||||||||||||||||||||||||||||||    
T  108072 ttttaaattcattcaattaatgatgtatatg 108042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 89708 - 89676
Alignment:
Q  265 cattttaaattcattcaattaatgatgtatatg 297  Q
    ||||||||||| |||||||||||||||||||||    
T  89708 cattttaaatttattcaattaatgatgtatatg 89676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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