View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1539_high_17 (Length: 253)
Name: NF1539_high_17
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5018268 - 5018498
Alignment:
| Q |
1 |
tgcaagtaagacgcatgagtaattttgggatgggtatggaaatccaaatttcagatcttgctaggccagaggagttagagaagagacaacagatatgtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5018268 |
tgcaagtaagacgcatgagtaattttgggatgggtatggaaatccaaatttcagatcttgctaggccagaggagttagagaagagacaacagatatgtgc |
5018367 |
T |
|
| Q |
101 |
tttagtactgctgtgttatatcgcgcattcagagtcggagcatttgaattctgagaacgagtgtaggtctgttcaactgatggcacagctagtagaaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5018368 |
tttagtactgctgtgttatatcgcgcattcagagtcggagcatttgaattctgagaacgagtgtaggtctgttcaactgatggcacagctagtagaaact |
5018467 |
T |
|
| Q |
201 |
gaaaaatgccgagacatcattcgcatgagcc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5018468 |
gaaaaatgccgagacatcattcgcatgagcc |
5018498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 5021112 - 5021197
Alignment:
| Q |
146 |
gaattctgagaacgagtgtaggtctgttcaactgatggcacagctagtagaaactgaaaaatgccgagacatcattcgcatgagcc |
231 |
Q |
| |
|
|||||||||||| || ||||||||||||| | ||||||||| ||||| ||||||||||||| || ||| ||||||||||||| |
|
|
| T |
5021112 |
gaattctgagaatgaacataggtctgttcaattaatggcacagttagtacaaactgaaaaatgtcggcgcattattcgcatgagcc |
5021197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 5020956 - 5021024
Alignment:
| Q |
3 |
caagtaagacgcatgagtaattttgggatgggtatggaaatc-caaatttcagatcttgctaggccaga |
70 |
Q |
| |
|
||||||||||| |||||||| || |||||||| ||||||||| | ||||||||| |||||||||||| |
|
|
| T |
5020956 |
caagtaagacgaatgagtaagttcgggatgggcatggaaatcagacttttcagatcatgctaggccaga |
5021024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 12858583 - 12858611
Alignment:
| Q |
189 |
ctagtagaaactgaaaaatgccgagacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12858583 |
ctagtagaaactgaaaaatgccgagacat |
12858611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University