View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_high_18 (Length: 240)
Name: NF1539_high_18
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46810421 - 46810642
Alignment:
| Q |
1 |
taaaattcccaagaccccaagcatcgcaaagcgagaatgaaccaactctgcttgcacataccactttaagctttcaggatcctctcctagtccaagtggg |
100 |
Q |
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| T |
46810421 |
taaaattcccaagaccccaagcattgcaaagcgagaatgaaccaactctgcttgcacataccactttaagctttcaggatcctctcctagtccaagtggg |
46810520 |
T |
|
| Q |
101 |
tcgaacccaaaatctccaggcaggctgaaaaggttaaccttaacgttacaataacttgaaaagagaaactaacactggcattttaagatgaacttaggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810521 |
tcgaacccaaaatctccaggcaggctgaaaaggttaaccttaacgttacaataacttgaaaagagaaactaacactggcattttaagatgaacttaggag |
46810620 |
T |
|
| Q |
201 |
tcaaaatgcatagaggcgtaag |
222 |
Q |
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||||||| || ||||||||||| |
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| T |
46810621 |
tcaaaatacagagaggcgtaag |
46810642 |
T |
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