View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1539_high_19 (Length: 236)
Name: NF1539_high_19
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41154250 - 41154472
Alignment:
| Q |
1 |
tagtggtgttgtgcctaaatcacttcttagatttccaagttgggttttttctggtaacaaccttacatcaggaaatagtacactttctccggcttttcct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41154250 |
tagtggtgttgtgcctaaatcacttcttagatttccaagttgggttttttctggtaacaaccttacatcagaaaatagtacactttctccggcttttcct |
41154349 |
T |
|
| Q |
101 |
atgcatccaccttatactcttccaccaaagaaaaccaaaggactcagcaaaactgcattattaggaatcatcattggtgtttgtgcacttggatttgcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41154350 |
atgcatccaccttatactcttccaccaaagaaaaccaaaggactcagcaaaactgcattattgggaatcatcattggtgtttgtgcacttggatttgcag |
41154449 |
T |
|
| Q |
201 |
tgatagcagttgtcatgattttg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41154450 |
tgatagcagttgtcatgattttg |
41154472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University