View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_high_2 (Length: 693)
Name: NF1539_high_2
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 176 - 595
Target Start/End: Complemental strand, 19901680 - 19901262
Alignment:
| Q |
176 |
aatttgagtttaattgtatttgttaggttaagcattttaatttcaattaacattgattgatccgttttgtttttagaaaccatctctagaagtgactcca |
275 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
19901680 |
aattttagtttaattgtatttgttaggttaagcattttaatttcaattaacattgattgatccgttttgtttttagaaaccatctccagaagtgactaca |
19901581 |
T |
|
| Q |
276 |
acatgttgggaaatatttgtatacacacacaaattgaaaggtgatccaagcaagtgggtttcctcaaaatcaaaggatattgctgtaagttattacttca |
375 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
19901580 |
acatgttgggaaatatttgtagacagacacaaattgaaaggtgatccaagcaagtgggtttcctcacaatcaaaggatattgttgtaagttattacttca |
19901481 |
T |
|
| Q |
376 |
tgaccttattgaacttgatgaatatttagtttatatttaaagtagttgaactatgatatggagattctgcactgatgataattgttatgaactgatgcta |
475 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||| |
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| T |
19901480 |
tgaccttattgaacttgatgaatatttagtctatttttaaagtagttgaactatgatatggaggttctgcacttatgctaattgttaagaactgatgcta |
19901381 |
T |
|
| Q |
476 |
tttttaattgttttaaatagttctgcactgaaataattgttcactgatgctagttgttgggaactagttatacactaatgttattattatggaggttcta |
575 |
Q |
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|||||||||||||| |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
19901380 |
tttttaattgtttt-aataattttgaactgaaataattgttcactgatgctagttgttgggaactagttatacactgatgctatttttatggaggttctg |
19901282 |
T |
|
| Q |
576 |
cactgatgctaattgttaag |
595 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19901281 |
cactgatgctaattgttaag |
19901262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 432 - 665
Target Start/End: Complemental strand, 19901294 - 19901062
Alignment:
| Q |
432 |
tatggagattctgcactgatgataattgttatgaactgatgctatttttaattgttttaaatagttctgcactgaaataattgttcactgatgctagttg |
531 |
Q |
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||||||| ||||||||||||| ||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19901294 |
tatggaggttctgcactgatgctaattgttaagaacttatgctatttctaattgttttaa-tagttctgcactgaaataattgttcactgatgctagttg |
19901196 |
T |
|
| Q |
532 |
ttgggaactagttatacactaatgttattattatggaggttctacactgatgctaattgttaagcacatatgtagcagtctccaagtgtatgtttaattg |
631 |
Q |
| |
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|||| ||||||||||||||| ||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
19901195 |
ttggaaactagttatacactgatgttattactatggaggttctgcactcatgttaattgttaagcacatatgtagcaggctgcaagtatatgtttaattg |
19901096 |
T |
|
| Q |
632 |
ttaagcacatatgaacactaccatttcaattctc |
665 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
19901095 |
ttaagcacatatgagtactaccatttcaattctc |
19901062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 313 - 527
Target Start/End: Original strand, 3582088 - 3582300
Alignment:
| Q |
313 |
aaggtgatccaagcaagtgggtttcctcaaaatcaaaggatattgctgtaagttattacttcatgaccttattgaacttgatgaatatttagtttatatt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |
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| T |
3582088 |
aaggtgatccaagcaagtgggtttcctcaaaatcaaaagatattgctgtaagttattacatcatgaccttattgaacttgatgaatatttagtctatttt |
3582187 |
T |
|
| Q |
413 |
taaagtagttgaactatgatatggagattctgcactgatgataattgttatgaactgatgctatttttaattgttttaaatagttctgcactgaaataat |
512 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||| ||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
3582188 |
taaagtagttgaactatgatatggaggttcagcattgatgctaattgtta-gaactaatgctatttttaattgtttt-aatagttctgcactaaaataat |
3582285 |
T |
|
| Q |
513 |
tgttcactgatgcta |
527 |
Q |
| |
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||||||||||||||| |
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|
| T |
3582286 |
tgttcactgatgcta |
3582300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 602
Target Start/End: Original strand, 3582290 - 3582344
Alignment:
| Q |
548 |
cactaatgttattattatggaggttctacactgatgctaattgttaagcacatat |
602 |
Q |
| |
|
|||| ||| |||| ||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
3582290 |
cactgatgctatttttatggaggttatatactgatgctaattgttaagcacatat |
3582344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 176 - 452
Target Start/End: Complemental strand, 34801188 - 34800912
Alignment:
| Q |
176 |
aatttgagtttaattgtatttgttaggttaagcattttaatttcaattaacattgattgatccgttttgtttttagaaaccatctctagaagtgactcca |
275 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| | | ||||| ||| |
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| T |
34801188 |
aattttagttttattgtatttgttaggttaaacattttaattttaattaacattgattaatccgttttgtttttagaaaacatctgcaaatgtgacacca |
34801089 |
T |
|
| Q |
276 |
acatgttgggaaatatttgtatacacacacaaattgaaaggtgatccaagcaagtgggtttcctcaaaatcaaaggatattgctgtaagttattacttca |
375 |
Q |
| |
|
||||||||||| | ||| | | | |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |||| |
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| T |
34801088 |
acatgttgggacttgtttcaagtgatatacaaattgaaaggtgatccaagcaagtgagtttcctcaaaatcaaaggatgttcttgtaagttataacttgg |
34800989 |
T |
|
| Q |
376 |
tgaccttattgaacttgatgaatatttagtttatatttaaagtagttgaactatgatatggagattctgcactgatg |
452 |
Q |
| |
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||| ||||||||||||||||| | |||||| ||| |||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
34800988 |
tgaacttattgaacttgatgagtttttagtctatttttaaagtagttgaactatgatatggaggttctgcaatgatg |
34800912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 28007825 - 28007900
Alignment:
| Q |
97 |
aatgcgtaagaaattggatgaaaaatggagtgagaatgaatggaaaagcaaggcaaaaactaagagcgaaaacaga |
172 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||| ||| ||||||||||| |
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| T |
28007825 |
aatgcgtaaaaaattggatgaaaaatggagtgagaatgaatggaaaaggaagtcacaaattaatggcgaaaacaga |
28007900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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