View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_high_20 (Length: 226)
Name: NF1539_high_20
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_high_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38955113 - 38954889
Alignment:
| Q |
1 |
taatcaaaacatcaattgcacttttcattatgtacctgttatataaatcaactaacaaaaatgttagacgatgnnnnnnnggattctttgcatggcctgt |
100 |
Q |
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| T |
38955113 |
taatcaaaacatcaattgcacttttcattatgcacctgttatataaatcaactaacaaaa-tgttagacgatgaaaaaaaggattctttgcatggcctgt |
38955015 |
T |
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| Q |
101 |
ggcctaaattttccaccagaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgacatccaacacgga |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38955014 |
ggcctaaattttccacccgaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgacatccaacacgga |
38954915 |
T |
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| Q |
201 |
tttgacagtgattttacctgtacgca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38954914 |
tttgacagtgattttacctgtacgca |
38954889 |
T |
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