View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_high_5 (Length: 515)
Name: NF1539_high_5
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 39933951 - 39933642
Alignment:
| Q |
13 |
tgaaaatgggaataaaaatttagtgggcctggagcccttgaacaccctggatcctccaacaaatagacatataacaggctaggctnnnnnnntatggacg |
112 |
Q |
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| T |
39933951 |
tgaaaatgggaataaaaatttagtgggcctggagcccttgaacaccctggatccaccaacaaatagacatatagcaggctaggctaaaaaaatatggacg |
39933852 |
T |
|
| Q |
113 |
atcttacttttatcacactatatgtttctcgcgtgtcctactgaacggtaattaaccaccgttcagnnnnnnnnctaggtgcctaaagagcaatttcctt |
212 |
Q |
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| T |
39933851 |
atcatacttttatctcactatatgtttcttgcgtgtcctactgaatggtaattaaccaccgttcagtttttttactaagtgcctaaagagcaatttcctt |
39933752 |
T |
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| Q |
213 |
ataagggta----nnnnnnnnatcttttgggggcttatgaggaattagggggtccataaaacaattctcaagtaacaatatccgtagaagaaatataaca |
308 |
Q |
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| T |
39933751 |
ataagggtattttttttttttatcttttgggggcttatgaggaattagggggtccataaaacaattctcaagtaacaatatccgtagaagaaatataaca |
39933652 |
T |
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| Q |
309 |
cagcatggtc |
318 |
Q |
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| T |
39933651 |
cagcatggtc |
39933642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 382 - 495
Target Start/End: Complemental strand, 39933578 - 39933465
Alignment:
| Q |
382 |
tttacaactgtttcaattcaattgatcagaatagtgaagtgttggtaacaacagaaactatacataaacgatgaacaatactcattcgcaatattcgatc |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39933578 |
tttacaactgtttcaattcaattgatcagaatagtgaagtgttggtaacaacagaaactatacataaaagatgaacaatactcattcgcaatattcgatc |
39933479 |
T |
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| Q |
482 |
aaatcaaacaccat |
495 |
Q |
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|||||||||||||| |
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| T |
39933478 |
aaatcaaacaccat |
39933465 |
T |
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