View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_high_9 (Length: 402)
Name: NF1539_high_9
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 44005896 - 44005506
Alignment:
| Q |
7 |
cataatactaatttaattataaggattacattcttttgatagattttgtccaaacacagcgttggttttgttccatctgcctaagagaagttttcatata |
106 |
Q |
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| T |
44005896 |
cataatactaatttaattataaggattacattcttttgatagattttgtccaaacacagcgttggttttgttccatctgcctaagagaagttttcatata |
44005797 |
T |
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| Q |
107 |
ttcacattactataataatgt------------tcatgatgctgaaaatgggaccgaaagagnnnnnnnnncggctaataaaatatgttcttattccatt |
194 |
Q |
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| T |
44005796 |
ttcacattactataataatgtatataataatgttcatgatgctgaaaatgggaccgaaagagttttttttt-ggctaataaaatatgttcttattccatt |
44005698 |
T |
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| Q |
195 |
tccagcattccttgattgttgctgaatccaacttgttcatcatggcattacattaccagtgtcaccatctaccaaatgatcaatgagcatttcccttatc |
294 |
Q |
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| T |
44005697 |
tccagcattccttgattgttgctgaatccaacttgttcatcatggcattacattaccagtgtcaccatctaccaaatgatcaatgagcatttcccttatc |
44005598 |
T |
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| Q |
295 |
caaacaaatctctgaaatatctttccttttctctctttcctatccaatttaactgtaattaattttgttttctacttttctatattatatac |
386 |
Q |
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| T |
44005597 |
caaacaaatctctgaaagatctttccttttctctctttcctatccaatttaactgtaattaattttgctttctacttttctatattatatac |
44005506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 214 - 379
Target Start/End: Complemental strand, 44009605 - 44009436
Alignment:
| Q |
214 |
tgctgaatccaacttgttcatcatggcattacattaccagtgtcaccatctaccaaatgatcaatgagcatttcccttatccaaacaaatctctgaaata |
313 |
Q |
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| T |
44009605 |
tgctaaatccaacttgttcag---ggcaatacattacgagtgtcaccatctaccaaatgatcaatgagcatttcccttatccaaacaaatatgtgaaaga |
44009509 |
T |
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| Q |
314 |
tct-----ttccttttctc--tctttcctatccaatttaactgtaattaattttgttttctacttttctatat |
379 |
Q |
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| T |
44009508 |
actttaaattccttttctctttctttcctatccaatttaactataattatttctgttttatacttttctatat |
44009436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 44009852 - 44009759
Alignment:
| Q |
29 |
ggattacattcttttgatagattttgtcca-aacacagcgttggttttgttccatctgcctaagagaagttttcatatattcacattactataa |
121 |
Q |
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| T |
44009852 |
ggattacattcttttgatagattttgtccacaacacagcattggttttgttccatctacctatgagaagattgtatatattaatattactataa |
44009759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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