View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1539_low_1 (Length: 894)

Name: NF1539_low_1
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1539_low_1
NF1539_low_1
[»] chr3 (9 HSPs)
chr3 (11-702)||(55448480-55449171)
chr3 (788-879)||(55449257-55449348)
chr3 (790-872)||(29563546-29563628)
chr3 (800-872)||(21523722-21523794)
chr3 (812-865)||(9503959-9504012)
chr3 (791-872)||(11836809-11836890)
chr3 (795-872)||(29719752-29719829)
chr3 (795-872)||(33458528-33458605)
chr3 (799-872)||(52426427-52426500)
[»] chr8 (20 HSPs)
chr8 (790-872)||(2510590-2510672)
chr8 (800-865)||(10710024-10710089)
chr8 (795-872)||(2620093-2620170)
chr8 (800-872)||(40691292-40691364)
chr8 (800-872)||(22738727-22738801)
chr8 (795-865)||(25107296-25107366)
chr8 (794-872)||(35458908-35458986)
chr8 (812-872)||(31587849-31587909)
chr8 (795-862)||(9617434-9617501)
chr8 (790-872)||(38995989-38996071)
chr8 (790-872)||(44602011-44602093)
chr8 (802-872)||(44652475-44652545)
chr8 (800-872)||(2062548-2062620)
chr8 (804-872)||(39628724-39628792)
chr8 (804-872)||(39638274-39638342)
chr8 (802-872)||(255044-255114)
chr8 (802-872)||(660806-660876)
chr8 (802-872)||(846542-846612)
chr8 (812-865)||(10812028-10812081)
chr8 (800-872)||(39139473-39139546)
[»] chr5 (12 HSPs)
chr5 (800-872)||(42108646-42108718)
chr5 (795-872)||(38876753-38876830)
chr5 (795-872)||(19297980-19298057)
chr5 (803-872)||(40514896-40514965)
chr5 (790-872)||(6391357-6391439)
chr5 (791-872)||(22859570-22859651)
chr5 (801-872)||(40201751-40201824)
chr5 (802-851)||(11873606-11873655)
chr5 (812-865)||(14830730-14830783)
chr5 (839-872)||(15230860-15230893)
chr5 (791-872)||(15897921-15898001)
chr5 (812-865)||(16885585-16885638)
[»] chr4 (8 HSPs)
chr4 (801-872)||(36706387-36706458)
chr4 (790-872)||(4576583-4576665)
chr4 (802-872)||(6892933-6893003)
chr4 (790-872)||(11432352-11432434)
chr4 (791-872)||(26660250-26660331)
chr4 (791-872)||(6828937-6829017)
chr4 (800-872)||(32519856-32519929)
chr4 (800-872)||(22320104-22320176)
[»] chr7 (9 HSPs)
chr7 (800-872)||(32420482-32420554)
chr7 (812-875)||(42672886-42672949)
chr7 (800-872)||(25685422-25685494)
chr7 (790-853)||(9271296-9271359)
chr7 (802-872)||(18330704-18330774)
chr7 (794-872)||(32684360-32684438)
chr7 (790-864)||(42766494-42766568)
chr7 (802-871)||(25072816-25072884)
chr7 (790-872)||(41015710-41015794)
[»] chr1 (13 HSPs)
chr1 (790-866)||(51370349-51370425)
chr1 (790-872)||(4362326-4362408)
chr1 (790-872)||(35718551-35718633)
chr1 (791-872)||(22863375-22863456)
chr1 (795-872)||(30562398-30562475)
chr1 (803-872)||(3532785-3532854)
chr1 (802-872)||(3022728-3022799)
chr1 (821-872)||(4402128-4402179)
chr1 (793-872)||(1825088-1825169)
chr1 (802-872)||(6136084-6136154)
chr1 (790-872)||(27089824-27089906)
chr1 (812-865)||(25412210-25412263)
chr1 (803-872)||(45621527-45621596)
[»] chr6 (5 HSPs)
chr6 (790-872)||(6228048-6228130)
chr6 (791-872)||(10667691-10667773)
chr6 (790-872)||(13640929-13641011)
chr6 (790-872)||(33248188-33248270)
chr6 (795-872)||(6248720-6248797)
[»] chr2 (11 HSPs)
chr2 (790-872)||(13560081-13560163)
chr2 (791-872)||(39848422-39848503)
chr2 (804-872)||(10057357-10057425)
chr2 (799-875)||(5712454-5712530)
chr2 (802-862)||(30992453-30992512)
chr2 (801-872)||(9730266-9730336)
chr2 (790-865)||(40629305-40629380)
chr2 (790-872)||(43898202-43898285)
chr2 (790-872)||(16055095-16055180)
chr2 (791-872)||(16202001-16202085)
chr2 (812-865)||(9716199-9716252)
[»] scaffold0373 (1 HSPs)
scaffold0373 (791-872)||(7403-7483)


Alignment Details
Target: chr3 (Bit Score: 644; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 11 - 702
Target Start/End: Original strand, 55448480 - 55449171
Alignment:
Q  11 gaacaaacctcccttcattgtttgattcattcattgcttcattcatggactactgctatttttggatggagcagcctgttgttgttacttcaaatgtcaa 110  Q
    ||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55448480 gaacaaaccccccttcattgtttgattgattcattcattcattcatggactactgctatttttggatggagcagcctgttgttgttactccaaatgtcaa 55448579  T
Q  111 atatgttttccttttaaatacatgtcccatggattggttgctattttcagaaaatttcattaattaataataaactctattgtctcctcttccatgcaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448580 atatgttttccttttaaatacatgtcccatggattggttgctattttcagaaaatttcattaattaataataaactctattgtctcctcttccatgcaat 55448679  T
Q  211 tcaccattacgcaatatacaattactcgttatcattggaaatagtgcttgtttcttttcagttataatttttaatagctggggcagctagagtcagtgat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  55448680 tcaccattacgcaatatacaattactcgttatcattggaaatagtgcttgtttcttttcagttataatttttaatagctggggcagctagagtcagtgtt 55448779  T
Q  311 tccagatatattagaagccacaaattcgagcttcactattaccgcgctctccacataatcggattttcccaaacacactcaataccatcagagttagtta 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448780 tccagatatattagaagccacaaattcgagcttcactattaccgcgctctccacataatcggattttcccaaacacactcaataccatcagagttagtta 55448879  T
Q  411 caggtagttagagtgagggcatgctggaattttggaattaactgttgggaggatattgtttcctcaaacaaccagagctgctgtctctgtcattcatttc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448880 caggtagttagagtgagggcatgctggaattttggaattaactgttgggaggatattgtttcctcaaacaaccagagctgctgtctctgtcattcatttc 55448979  T
Q  511 attcttgggtaggtaggggtggccgggtgggtataaactagggtacatgtttgatagtctaggctatgtcggtcaccagattttttaaaaatagacaacg 610  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448980 attcttgggtaggtaggggtggccgggtgggtataagccagggtacatgtttgatagtctaggctatgtcggtcaccagattttttaaaaatagacaacg 55449079  T
Q  611 tgtagactttttggtagcctatttagctaaaaaagtcaggctacatgccataaatgcagtctttcaggccgagctacttaagtacggataac 702  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||    
T  55449080 cgtagactttttggtagcctatttagctaaaaaagtcaggctacatgccataaatgaagcctttcaagccgagctacttaagtacggataac 55449171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 788 - 879
Target Start/End: Original strand, 55449257 - 55449348
Alignment:
Q  788 gctaaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtgctat 879  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55449257 gctaacctttttagtaatttaaacttattactctacattaattattttcacatttaaatgtattatgataaactagaaatgaaatgtgctat 55449348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 29563546 - 29563628
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| ||||||| | |||||||||| | |||| ||||||||||||||| ||||||||||| ||||||    
T  29563546 taactttttcagtaatttaagcttattagtatacattaattttatgcatatttaaatgtattattataaactagaattgaaat 29563628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 800 - 872
Target Start/End: Original strand, 21523722 - 21523794
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| |||||||  ||||||||||| |||||| ||||| ||||||||| |||||||| || ||||||    
T  21523722 agtaatttaagcttattagcctacattaattttttgcatatttatatgtattattataaactaaaattgaaat 21523794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 865
Target Start/End: Complemental strand, 9504012 - 9503959
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  9504012 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 9503959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 11836809 - 11836890
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| || |||||||| ||||||| | ||||||| || |  ||| ||||||||||||||| ||||| ||||| ||||||    
T  11836809 aacctttaaattaatttaagcttattagtttacattatttttccgcatatttaaatgtattattataaattagaattgaaat 11836890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 872
Target Start/End: Complemental strand, 29719829 - 29719752
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| ||||||||||  ||||||   || ||||||| ||| |||||||||||||||||| | ||||||||| ||||||    
T  29719829 tttttagtaatttaagtttattagcatagattaattttttacacatttaaatgtattattacaaactagaattgaaat 29719752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 795 - 872
Target Start/End: Original strand, 33458528 - 33458605
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||||||||  ||||||| | || |||||||  | ||| ||||||||||||||| ||||||||||| ||||||    
T  33458528 tttttagtaatttatgcttattagtatatattaatttctcgcatatttaaatgtattattataaactagaattgaaat 33458605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 799 - 872
Target Start/End: Complemental strand, 52426500 - 52426427
Alignment:
Q  799 aagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||||| ||||||| | || |||| || || ||| ||||||||||||||| ||||| ||||| ||||||    
T  52426500 aagtaatttaagcttattagtttatattattttttcgcatatttaaatgtattattataaattagaattgaaat 52426427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 2510672 - 2510590
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| ||||||| | |||||||||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  2510672 taactttttcagtaatttaagcttattagtatacattaattttttgcatatttaaatgtattattataaactagaattgaaat 2510590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 800 - 865
Target Start/End: Original strand, 10710024 - 10710089
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||||||| ||||||||| | |||||||||| |||||||||||||||||||||| |||||||||||    
T  10710024 agtaatttgaacttattagtatacattaattttttgcacatttaaatgtattattataaactagaa 10710089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 795 - 872
Target Start/End: Original strand, 2620093 - 2620170
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||||||||| ||||||| | |||||| ||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  2620093 ttttcagtaatttaagcttattagtatacatttattttttgcatatttaaatgtattattataaactagaattgaaat 2620170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 40691364 - 40691292
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| ||||||| |||||||||||  |||||| ||||| ||||||||| ||||||||||| ||||||    
T  40691364 agtaatttaagcttattagtctacattaatattttgcatatttatatgtattattataaactagaattgaaat 40691292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 22738801 - 22738727
Alignment:
Q  800 agtaatttaaacttattactctacattaattattt--gcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||||||||||| | |||||||||| |||  ||| ||||||||||||||| ||||||||||| ||||||    
T  22738801 agtaatttaaacttattagtatacattaattttttttgcatatttaaatgtattattataaactagaattgaaat 22738727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 795 - 865
Target Start/End: Original strand, 25107296 - 25107366
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||||| |||||||||||    
T  25107296 ttttcagtaatttaagtttattagtatacattaattttttgcatatttaaatgtattattataaactagaa 25107366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 794 - 872
Target Start/End: Complemental strand, 35458986 - 35458908
Alignment:
Q  794 cttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| ||||||||||||||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| ||||||    
T  35458986 ctttaaagtaatttaaacttattagtgtacattattttttcgcatatttaaatgtattattataaattagaattgaaat 35458908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 812 - 872
Target Start/End: Original strand, 31587849 - 31587909
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  31587849 ttattagtctacattaattttttgcatatttatatgtattattataaactagaattgaaat 31587909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 795 - 862
Target Start/End: Complemental strand, 9617501 - 9617434
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaacta 862  Q
    |||| |||||||||| ||||||| | |||||||| | |||||| ||||||||||||||| ||||||||    
T  9617501 tttttagtaatttaagcttattagtatacattaactttttgcatatttaaatgtattattataaacta 9617434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 38995989 - 38996071
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||| ||||| ||||||| | | |||||||| |||||| || |||||||||||| ||||||||||| ||||||    
T  38995989 taactttttcagtattttaagcttattagtatgcattaattttttgcatatataaatgtattattataaactagaattgaaat 38996071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 44602011 - 44602093
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||| ||||| ||||||| | | |||||||| |||||| || |||||||||||| ||||||||||| ||||||    
T  44602011 taactttttcagtattttaagcttattagtatgcattaattttttgcatatataaatgtattattataaactagaattgaaat 44602093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 802 - 872
Target Start/End: Original strand, 44652475 - 44652545
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||||||||| | | |||||||  |||||| ||||||||| ||||| ||||||||||| ||||||    
T  44652475 taatttaaacttattagtatgcattaatcttttgcatatttaaatgcattattataaactagaattgaaat 44652545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 800 - 872
Target Start/End: Original strand, 2062548 - 2062620
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| ||||||| | |||||||||| |||||| ||||||||||| ||| | |||||| || ||||||    
T  2062548 agtaatttaagcttattagtatacattaattttttgcatatttaaatgtactattacaaactataattgaaat 2062620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 804 - 872
Target Start/End: Original strand, 39628724 - 39628792
Alignment:
Q  804 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||| ||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  39628724 atttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 39628792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 804 - 872
Target Start/End: Original strand, 39638274 - 39638342
Alignment:
Q  804 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||| ||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  39638274 atttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 39638342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 802 - 872
Target Start/End: Complemental strand, 255114 - 255044
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  255114 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaat 255044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 802 - 872
Target Start/End: Original strand, 660806 - 660876
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  660806 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaat 660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 802 - 872
Target Start/End: Original strand, 846542 - 846612
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| ||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  846542 taatttaagcttattagtatacattaatttttcgcatatataaatgtattattataaactataactgaaat 846612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 865
Target Start/End: Complemental strand, 10812081 - 10812028
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  10812081 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 10812028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 39139546 - 39139473
Alignment:
Q  800 agtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||||  |||||| |||||||||||| ||| ||| ||||| || |||||| ||||||||||| ||||||    
T  39139546 agtaatttaagtttattagtctacattaatttttttgcatatttatatttattattataaactagaattgaaat 39139473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 42108718 - 42108646
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  42108718 agtaatttaagcttattaatctacattaattttttgcatatttatatgtattattataaactagaattgaaat 42108646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 795 - 872
Target Start/End: Complemental strand, 38876830 - 38876753
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||||||| ||||||||| | |||||||||| |||| | ||||||||||||||| ||||||||||| ||||||    
T  38876830 tttttagtaatttcaacttattaatatacattaattttttgtatatttaaatgtattattataaactagaattgaaat 38876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 795 - 872
Target Start/End: Original strand, 19297980 - 19298057
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||||||||| ||||||| | |||||||| | |||||| || |||||||||||| ||||||||||| ||||||    
T  19297980 ttttcagtaatttaagcttattagtatacattaactttttgcatatataaatgtattattataaactagaattgaaat 19298057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 803 - 872
Target Start/End: Complemental strand, 40514965 - 40514896
Alignment:
Q  803 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| ||| ||| | |||||||||| |||||| ||||||||||||||| ||||||||||| ||||||    
T  40514965 aatttaagcttgttagtgtacattaattttttgcatatttaaatgtattattataaactagaattgaaat 40514896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 6391357 - 6391439
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| ||||||| | | |||||||| |||| | ||||||||||||||  ||||||||||| ||||||    
T  6391357 taactttttcagtaatttaagcttattaatatgcattaattttttgtatatttaaatgtattactataaactagaattgaaat 6391439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 22859570 - 22859651
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| ||||||||||| ||||||| | ||||||| || |||||| |||||||  |||||| ||||| ||||| ||||||    
T  22859570 aacctttaaagtaatttaagcttattagtttacattatttttttgcatatttaaaactattattataaattagaattgaaat 22859651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 801 - 872
Target Start/End: Original strand, 40201751 - 40201824
Alignment:
Q  801 gtaatttaaacttattactctacatta--attatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||| ||||||| | |||||||  ||| |||| | ||||||||||||||| ||||||||||| ||||||    
T  40201751 gtaatttaagcttattagtatacattattattttttgaatatttaaatgtattattataaactagaattgaaat 40201824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 802 - 851
Target Start/End: Complemental strand, 11873655 - 11873606
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtatt 851  Q
    |||||||||||||||| | |||||||||| | |||| |||||||||||||    
T  11873655 taatttaaacttattagtatacattaattttctgcatatttaaatgtatt 11873606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 865
Target Start/End: Complemental strand, 14830783 - 14830730
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  14830783 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 14830730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 839 - 872
Target Start/End: Original strand, 15230860 - 15230893
Alignment:
Q  839 atttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||||||||||||||| ||||||||||||    
T  15230860 atttaaatgtattatgataaattagaaatgaaat 15230893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 15897921 - 15898001
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| |||||||||| ||||| |||||||||||| ||  |||| ||||||  ||||| || |||||||| ||||||    
T  15897921 aaccttttaaataatttaaacgtattagtctacattaatttttctcacaattaaatagattattat-aactagaattgaaat 15898001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 865
Target Start/End: Complemental strand, 16885638 - 16885585
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  16885638 ttattaatttacattaattttttgcatatataaatgtattattataaactagaa 16885585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 801 - 872
Target Start/End: Complemental strand, 36706458 - 36706387
Alignment:
Q  801 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||||||||||| |||||||||||| ||| || ||||||||||||||| ||||| ||||| ||||||    
T  36706458 gtaatttaaacttattagtctacattaatttttttcaaatttaaatgtattattataaagtagaattgaaat 36706387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 4576583 - 4576665
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| ||||||| | || ||||||| |||||| |||||||| |||||| ||||||||||| ||||||    
T  4576583 taacttttttagtaatttaagcttattagtatatattaattttttgcatatttaaatttattattataaactagaattgaaat 4576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 802 - 872
Target Start/End: Original strand, 6892933 - 6893003
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| ||||||| | |||||||||  |||||| ||||||||||||||| ||||||||||| ||||||    
T  6892933 taatttaagcttattagtatacattaatgttttgcatatttaaatgtattattataaactagaattgaaat 6893003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 11432352 - 11432434
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| |||| || | |||||||||| |||||| |||||||||||||||  |||||||||| ||||||    
T  11432352 taactttttcagtaatttaagcttactaatatacattaattttttgcatatttaaatgtattattgtaaactagaattgaaat 11432434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 791 - 872
Target Start/End: Complemental strand, 26660331 - 26660250
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| ||||||||||| ||||||| | ||||||| || |||||| ||||||||||||||| ||||| || || ||||||    
T  26660331 aacctttaaagtaatttaagcttattagtttacattatttttttgcatatttaaatgtattattataaattataattgaaat 26660250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 6828937 - 6829017
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| ||||||    
T  6828937 aacctttaaagtaatttaagcttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaat 6829017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 32519929 - 32519856
Alignment:
Q  800 agtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| ||||||| | ||||||| || ||| ||||||||||||||||||| |||||||| || ||||||    
T  32519929 agtaatttaagcttattagtatacattattttttttgcacatttaaatgtattattataaactataattgaaat 32519856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 22320176 - 22320104
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| | ||||| |||||||||||| |||||| ||||| || |||||  ||||||||||| ||||||    
T  22320176 agtaatttaagcatattagtctacattaattttttgcatatttatatatattactataaactagaattgaaat 22320104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 32420554 - 32420482
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| ||||||| | |||||||||| |||||| |||||||||| |||| ||||||||||| ||||||    
T  32420554 agtaatttaagcttattagtatacattaattttttgcatatttaaatgttttattataaactagaattgaaat 32420482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 812 - 875
Target Start/End: Complemental strand, 42672949 - 42672886
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtg 875  Q
    |||||| |||||||||||| |||||| ||||| ||||||||| ||||||||||| |||||||||    
T  42672949 ttattagtctacattaattttttgcatatttatatgtattattataaactagaattgaaatgtg 42672886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 800 - 872
Target Start/End: Complemental strand, 25685494 - 25685422
Alignment:
Q  800 agtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||||  |||||| |||||| ||||| |||||| ||||| ||||||||| ||||||||||| ||||||    
T  25685494 agtaatttaagtttattagtctacactaattttttgcatatttatatgtattattataaactagaattgaaat 25685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 790 - 853
Target Start/End: Complemental strand, 9271359 - 9271296
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattat 853  Q
    |||| |||| |||||||||| | ||||| | ||||||||||||||| | |||||||||||||||    
T  9271359 taactttttcagtaatttaagcctattagtatacattaattatttgtatatttaaatgtattat 9271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 802 - 872
Target Start/End: Original strand, 18330704 - 18330774
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||  |||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  18330704 taatttaaggttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 18330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 794 - 872
Target Start/End: Complemental strand, 32684438 - 32684360
Alignment:
Q  794 cttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||| |||||||||| ||||||  |  ||||||| | |||||| ||||||||||| ||| ||||||||||| ||||||    
T  32684438 cttttcagtaatttaagcttatttgtgaacattaaatttttgcatatttaaatgtaatattataaactagaattgaaat 32684360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 864
Target Start/End: Original strand, 42766494 - 42766568
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactaga 864  Q
    ||||||||  |||||||||| |||| || ||||| |||||| ||| ||  |||||||||||||| ||||||||||    
T  42766494 taacctttacagtaatttaagcttactagtctacgttaattttttacatgtttaaatgtattattataaactaga 42766568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 802 - 871
Target Start/End: Complemental strand, 25072884 - 25072816
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaa 871  Q
    |||||||||||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| |||||    
T  25072884 taatttaaacttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaa 25072816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 41015710 - 41015794
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaa--ttatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||||||||||| | ||||||||  || ||| || |||||||||||||||  ||||||| || ||||||    
T  41015710 taacttttttagtaatttaaacttattagtatacattaatttttttttcatatttaaatgtattattgtaaactataattgaaat 41015794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 790 - 866
Target Start/End: Complemental strand, 51370425 - 51370349
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaa 866  Q
    |||| |||| |||||||||| ||||||| | |||||||||| |||||| |||| |||||||||| ||||||||||||    
T  51370425 taactttttcagtaatttaagcttattagtatacattaattttttgcatatttgaatgtattattataaactagaaa 51370349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 4362408 - 4362326
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| ||||||||||||||| ||||| | | |||||||||  |||||| ||||||||||||||| |||||||| || ||||||    
T  4362408 taactttttaagtaatttaagcttatcagtatacattaatgttttgcatatttaaatgtattattataaactaaaattgaaat 4362326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 35718633 - 35718551
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||||| ||||||||||  |||||| | ||| || ||| |||||| ||| ||||||||||||||||||||||| ||||||    
T  35718633 taacctttttagtaatttaagtttattagtatactttgattttttgcatattcaaatgtattatgataaactagaattgaaat 35718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 791 - 872
Target Start/End: Complemental strand, 22863456 - 22863375
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| ||||||    
T  22863456 aacctttaaagtaatttaagcttattagtttacattattttttcgcatatttaaatgtattattataaattagaattgaaat 22863375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 795 - 872
Target Start/End: Complemental strand, 30562475 - 30562398
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| ||||||||||  |||||| | |||||||||| |||||| ||||||||||||||| ||||| ||||| ||||||    
T  30562475 ttttcagtaatttaagtttattagtatacattaattttttgcatatttaaatgtattattataaattagaattgaaat 30562398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 803 - 872
Target Start/End: Original strand, 3532785 - 3532854
Alignment:
Q  803 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| |||||| |||||| ||||| |||||| ||||||||||||||| || || ||||| ||||||    
T  3532785 aatttaaaattattagtctacaataattttttgcatatttaaatgtattattatgaaatagaattgaaat 3532854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 872
Target Start/End: Complemental strand, 3022799 - 3022728
Alignment:
Q  802 taatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| ||||||  | |||||||||| ||| ||| ||||||||||||||| ||||||||||| ||||||    
T  3022799 taatttaagcttatttgtatacattaatttttttgcatatttaaatgtattattataaactagaattgaaat 3022728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 872
Target Start/End: Original strand, 4402128 - 4402179
Alignment:
Q  821 tacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||| |||||| ||||||||||||||| ||||| ||||| ||||||    
T  4402128 tacattaattttttgcatatttaaatgtattattataaattagaattgaaat 4402179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 872
Target Start/End: Original strand, 1825088 - 1825169
Alignment:
Q  793 ccttttaagtaatttaaacttattactctacattaattatttgcacat--ttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||| ||||||||||  |||||| | |||||||||| ||| || ||  ||||||||||||| ||||||||||| ||||||    
T  1825088 cctttttagtaatttaaggttattagtatacattaattttttacatatatttaaatgtattattataaactagaattgaaat 1825169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 802 - 872
Target Start/End: Complemental strand, 6136154 - 6136084
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| ||||||| | |||||||||| ||||||  |||||||  ||||| ||||||||||| ||||||    
T  6136154 taatttaagcttattagtatacattaattttttgcatgtttaaatacattattataaactagaattgaaat 6136084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 27089906 - 27089824
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| ||||||| | ||||||  || ||| || ||||||||||||||| |||||||| || ||||||    
T  27089906 taactttttcagtaatttaagcttattagtatacattgcttttttacatatttaaatgtattattataaactaaaattgaaat 27089824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 865
Target Start/End: Original strand, 25412210 - 25412263
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  25412210 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 25412263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 803 - 872
Target Start/End: Original strand, 45621527 - 45621596
Alignment:
Q  803 aatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| ||||||| | | |||||||| |||||| ||||||||||||||| | |||||| || ||||||    
T  45621527 aatttaaccttattagtatccattaattctttgcatatttaaatgtattattacaaactataattgaaat 45621596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Original strand, 6228048 - 6228130
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||||||||||| | |||||||||| || ||| || |||||||||||| |||||||| || ||||||    
T  6228048 taactttttcagtaatttaaacttattagtatacattaatttttcgcatatataaatgtattattataaactataattgaaat 6228130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 791 - 872
Target Start/End: Complemental strand, 10667773 - 10667691
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattattt-gcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||| |||||||||| ||||||| | |||||||||| ||| ||| ||||||||||||| | ||||||||||| ||||||    
T  10667773 aaccttttcagtaatttaagcttattagtatacattaatttttttgcatatttaaatgtattgttataaactagaattgaaat 10667691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 13641011 - 13640929
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| ||||| ||||||||| ||||||| | |||||||||| ||| || || |||||||||||| ||||||||||| ||||||    
T  13641011 taactttttatgtaatttaagcttattagtatacattaattttttacatatataaatgtattattataaactagaattgaaat 13640929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 33248270 - 33248188
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| ||||||| | || ||||||| |||||| ||||||||||||||  ||||||||||| ||||||    
T  33248270 taacttttttagtaatttaagcttattagtataaattaattttttgcatatttaaatgtattagtataaactagaactgaaat 33248188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 795 - 872
Target Start/End: Original strand, 6248720 - 6248797
Alignment:
Q  795 ttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||||||||| ||||||| | |||||||||| ||||||  | |||||||||||| || |||||||| ||||||    
T  6248720 ttttcagtaatttaagcttattagtatacattaattttttgcatttataaatgtattattatgaactagaattgaaat 6248797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 13560163 - 13560081
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||| ||||||||||  |||||| | |||||||||| |||||||||||||||||||||| ||||| | ||| ||||||    
T  13560163 taactttttcagtaatttaattttattagtatacattaattttttgcacatttaaatgtattattataaatttgaattgaaat 13560081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 39848422 - 39848503
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| || |||||||||||||||| | ||||||| || |||||| ||| ||||||||||| ||||| ||||| ||||||    
T  39848422 aacctttaaaataatttaaacttattagtttacattatttttttgcatattaaaatgtattattataaattagaattgaaat 39848503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 872
Target Start/End: Complemental strand, 10057425 - 10057357
Alignment:
Q  804 atttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||||||| | |||||||||| || ||| || |||||||||||| ||||||||||| ||||||    
T  10057425 atttaaacttattagtatacattaatttttcgcatatataaatgtattattataaactagaattgaaat 10057357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 799 - 875
Target Start/End: Original strand, 5712454 - 5712530
Alignment:
Q  799 aagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaatgtg 875  Q
    ||||||||||| ||||||| | ||||||| || ||  || ||||||||||||||| ||||| ||||| |||||||||    
T  5712454 aagtaatttaagcttattagtttacattattttttcacatatttaaatgtattattataaattagaattgaaatgtg 5712530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 802 - 862
Target Start/End: Complemental strand, 30992512 - 30992453
Alignment:
Q  802 taatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaacta 862  Q
    ||||| |||||||||| |||| ||||||| |||||| ||||||||||||||| ||||||||    
T  30992512 taattcaaacttattagtctatattaatt-tttgcatatttaaatgtattattataaacta 30992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 801 - 872
Target Start/End: Complemental strand, 9730336 - 9730266
Alignment:
Q  801 gtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||||||||  |||||| | |||||||||| ||| || ||||||||||||||| ||||||||||| ||||||    
T  9730336 gtaatttaaggttattagtatacattaatt-tttacatatttaaatgtattattataaactagaattgaaat 9730266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 790 - 865
Target Start/End: Complemental strand, 40629380 - 40629305
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||| |||| |||||||| || |||||| ||||||||| || || ||| |||||||| |||||| |||||||||||    
T  40629380 taacattttgagtaatttgaatttattagtctacattagtttttcgcatatttaaatttattattataaactagaa 40629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 43898285 - 43898202
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaa-ttatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    |||| |||||||||||||||||||||||   |||||||| || |||||| ||||||| ||||||| || || ||||| ||||||    
T  43898285 taactttttaagtaatttaaacttattaaaatacattaatttttttgcatatttaaaagtattattattaaatagaattgaaat 43898202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 872
Target Start/End: Complemental strand, 16055180 - 16055095
Alignment:
Q  790 taaccttttaagtaatttaaacttattactctacattaattattt-gcacatttaaatgtat--tatgataaactagaaatgaaat 872  Q
    |||| |||| |||||||||| ||||||| | |||||||||| ||| ||| ||||||||||||  ||| ||||||||||| ||||||    
T  16055180 taactttttcagtaatttaagcttattagtatacattaatttttttgcatatttaaatgtattatattataaactagaattgaaat 16055095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 791 - 872
Target Start/End: Original strand, 16202001 - 16202085
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattattt---gcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| || |||||||||||||||| | ||||||| || |||   ||| ||||||||||||||| ||||| ||||| ||||||    
T  16202001 aacctttaaaataatttaaacttattagtttacattatttttttttcgcatatttaaatgtattattataaattagaattgaaat 16202085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 865
Target Start/End: Original strand, 9716199 - 9716252
Alignment:
Q  812 ttattactctacattaattatttgcacatttaaatgtattatgataaactagaa 865  Q
    |||||| | |||||||||| |||||| || |||||||||||| |||||||||||    
T  9716199 ttattagtatacattaattttttgcatatataaatgtattattataaactagaa 9716252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 872
Target Start/End: Complemental strand, 7483 - 7403
Alignment:
Q  791 aaccttttaagtaatttaaacttattactctacattaattatttgcacatttaaatgtattatgataaactagaaatgaaat 872  Q
    ||||||| ||||||||||| ||||||| | ||||||| || || ||| ||||||||||||||| ||||| ||||| ||||||    
T  7483 aacctttaaagtaatttaagcttattagtttacattattt-ttcgcatatttaaatgtattattataaattagaattgaaat 7403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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