View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_low_14 (Length: 282)
Name: NF1539_low_14
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 44721236 - 44720979
Alignment:
| Q |
18 |
gcacgtgattcattcgcgtgcgacgcaaaagacgccgcaacaaagaacttagcattttgcaatgtgaaacttgcaataccagagagagtgaaggatctca |
117 |
Q |
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| T |
44721236 |
gcacgtgattcattcgcgtgcgacgcaaaagacgccgcaacaaagaacttaccattttgcaatgtgaaacttgcaataccagagagagtgaaggatctca |
44721137 |
T |
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| Q |
118 |
ttggaagattaacaatgcaagagaaggttaatctgttagtgaataatgctccggcggttcctagagtcggaatgaaaagctatgagtggtggtcggaggc |
217 |
Q |
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| T |
44721136 |
ttggaagattaacaatgcaagagaaggttaatctgttagtgaataatgctccggcggttcctagagtcggaatgaaaagctatgagtggtggtcggaggc |
44721037 |
T |
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| Q |
218 |
acttcatggtgtttcaaatgtgggtccaggtactagatttggtggtgtgttctctgct |
275 |
Q |
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| T |
44721036 |
acttcatggtgtttcaaatgtgggtccaggtactagatttggtggtgtgttccctgct |
44720979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 39088201 - 39088348
Alignment:
| Q |
105 |
gtgaaggatctcattggaagattaacaatgcaagagaaggttaatctgttagtgaataatgctccggcggttcctagagtcggaatgaaaagctatgagt |
204 |
Q |
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| T |
39088201 |
gtgaatgacctcattggaagattgacattgcaagaaaaggttagcatgttggtgaacaatgctgccgcggttccaagggttgggatcaaaggctatgagt |
39088300 |
T |
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| Q |
205 |
ggtggtcggaggcacttcatggtgtttcaaatgtgggtccaggtacta |
252 |
Q |
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| T |
39088301 |
ggtggtcagaggctcttcatggagtttcaaatgtgggaccaggaacta |
39088348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 13297934 - 13297998
Alignment:
| Q |
198 |
tatgagtggtggtcggaggcacttcatggtgtttcaaatgtgggtccaggtactagatttggtgg |
262 |
Q |
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| T |
13297934 |
tatgagtggtggtcggaagctttacatggtgtttctaatgtgggcccaggtactaaatttggtgg |
13297998 |
T |
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