View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1539_low_15 (Length: 275)

Name: NF1539_low_15
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1539_low_15
NF1539_low_15
[»] chr5 (4 HSPs)
chr5 (52-257)||(7472918-7473130)
chr5 (13-254)||(9044285-9044529)
chr5 (49-256)||(30441976-30442186)
chr5 (90-172)||(40163917-40163996)
[»] chr3 (5 HSPs)
chr3 (50-257)||(19881542-19881752)
chr3 (56-254)||(53972723-53972924)
chr3 (56-187)||(37982961-37983092)
chr3 (211-254)||(37982835-37982878)
chr3 (225-257)||(31685543-31685575)
[»] chr7 (3 HSPs)
chr7 (52-257)||(43070815-43071023)
chr7 (225-257)||(48849391-48849423)
chr7 (225-257)||(1262569-1262601)
[»] chr2 (4 HSPs)
chr2 (56-257)||(23348417-23348621)
chr2 (52-254)||(12742171-12742376)
chr2 (52-253)||(18354740-18354950)
chr2 (56-216)||(10328462-10328627)
[»] scaffold0596 (1 HSPs)
scaffold0596 (56-257)||(1134-1338)
[»] chr6 (1 HSPs)
chr6 (224-254)||(10092955-10092985)
[»] scaffold0035 (1 HSPs)
scaffold0035 (224-257)||(35541-35574)
[»] chr8 (1 HSPs)
chr8 (224-257)||(14677630-14677663)
[»] chr4 (1 HSPs)
chr4 (224-256)||(29862969-29863001)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 52 - 257
Target Start/End: Original strand, 7472918 - 7473130
Alignment:
52 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 151  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7472918 acatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 7473017  T
152 gtaatggaataacaaagttagggaaaagttacagga-----gatttagg--atatatgtatagcatcatcttcaacacacctggctgatacgatgccgca 244  Q
    ||||||||||||||||||||||||||||||||||||     ||||||||  |||||| ||||| | ||||||||||||||||||||||||||||||||||    
7473018 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatatagtagcatcttcaacacacctggctgatacgatgccgca 7473117  T
245 gacgacaacggcg 257  Q
    |||||||||||||    
7473118 gacgacaacggcg 7473130  T

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Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 9044529 - 9044285
Alignment:
13 catcaatggacatattggtgcgtttgnnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatcta 112  Q
    |||||||||||||||||||| |||||          || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
9044529 catcaatggacatattggtgtgtttgaaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatcta 9044430  T
113 tttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||  |||||    
9044429 tttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatag 9044332  T
208 catcatcttcaacacacctggctgatacgatgccgcagacgacaacg 254  Q
     | |||||||||||||| ||||||||||||||| |||||||||||||    
9044331 tagcatcttcaacacacttggctgatacgatgctgcagacgacaacg 9044285  T

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Target: chr5; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 49 - 256
Target Start/End: Original strand, 30441976 - 30442186
Alignment:
49 taaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa 148  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30441976 taaacatatgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaa 30442075  T
149 aatgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgc 243  Q
    |||||||||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | |||||||||||||  ||||||||||||||||||    
30442076 aatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacatatggctgatacgatgccgc 30442173  T
244 agacgacaacggc 256  Q
    |||||||||||||    
30442174 agacgacaacggc 30442186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
90 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttag 172  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| || ||||||||||||||||||||    
40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

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Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 50 - 257
Target Start/End: Original strand, 19881542 - 19881752
Alignment:
50 aaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaa 149  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19881542 aaacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaa 19881641  T
150 atgtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgca 244  Q
    ||||||||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||    
19881642 atgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacctggctgatacgatgccgca 19881739  T
245 gacgacaacggcg 257  Q
    |||||||||||||    
19881740 gacgacaacggcg 19881752  T

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Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 56 - 254
Target Start/End: Original strand, 53972723 - 53972924
Alignment:
56 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 155  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
53972723 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 53972822  T
156 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac 250  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | |||||||||||||| |||||||||||||||||||||||||    
53972823 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacttggctgatacgatgccgcagacgac 53972920  T
251 aacg 254  Q
    ||||    
53972921 aacg 53972924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 37983092 - 37982961
Alignment:
56 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 155  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37983092 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 37982993  T
156 tggaataacaaagttagggaaaagttacagga 187  Q
    ||||||||||||||||||||||||||||||||    
37982992 tggaataacaaagttagggaaaagttacagga 37982961  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 37982878 - 37982835
Alignment:
211 catcttcaacacacctggctgatacgatgccgcagacgacaacg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
37982878 catcttcaacacacctggctgatacgatgccgcagacgacaacg 37982835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 31685575 - 31685543
Alignment:
225 ctggctgatacgatgccgcagacgacaacggcg 257  Q
    |||||||||||||||||||||||||||||||||    
31685575 ctggctgatacgatgccgcagacgacaacggcg 31685543  T

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Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 52 - 257
Target Start/End: Original strand, 43070815 - 43071023
Alignment:
52 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 151  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43070815 acatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 43070914  T
152 gtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcaga 246  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||    
43070915 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacctggctgatacgatgccgcaga 43071012  T
247 cgacaacggcg 257  Q
    |||||||||||    
43071013 cgacaacggcg 43071023  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 48849391 - 48849423
Alignment:
225 ctggctgatacgatgccgcagacgacaacggcg 257  Q
    |||||||||||||||||||||||||||||||||    
48849391 ctggctgatacgatgccgcagacgacaacggcg 48849423  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 1262601 - 1262569
Alignment:
225 ctggctgatacgatgccgcagacgacaacggcg 257  Q
    |||||||||||||||||||| ||||||||||||    
1262601 ctggctgatacgatgccgcatacgacaacggcg 1262569  T

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Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 23348417 - 23348621
Alignment:
56 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 155  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23348417 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 23348516  T
156 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac 250  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||    
23348517 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacctggctgatacgatgccgcagacgac 23348614  T
251 aacggcg 257  Q
    |||||||    
23348615 aacggcg 23348621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 52 - 254
Target Start/End: Complemental strand, 12742376 - 12742171
Alignment:
52 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 151  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
12742376 acatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 12742277  T
152 gtaatggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcaga 246  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | |||||||||||||||| |||||||||||||||||||    
12742276 gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacaccttgctgatacgatgccgcaga 12742179  T
247 cgacaacg 254  Q
    ||||||||    
12742178 cgacaacg 12742171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 52 - 253
Target Start/End: Original strand, 18354740 - 18354950
Alignment:
52 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 151  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18354740 acatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 18354839  T
152 gtaatggaataacaaagttagggaaaagttacagga-----gatttagg----atatatgtatagcatcatcttcaacacacctggctgatacgatgccg 242  Q
    |||||||||||||||||||||||||||| |||||||     ||||||||    |||||| ||||| | ||||||||||||||||| ||||||||| ||||    
18354840 gtaatggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccg 18354939  T
243 cagacgacaac 253  Q
    ||||| |||||    
18354940 cagacaacaac 18354950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 10328462 - 10328627
Alignment:
56 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 155  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10328462 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 10328561  T
156 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatctt 216  Q
    |||||||||||||||||||||||| |||| ||     |||||||||||||| ||||| | ||||||    
10328562 tggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtagcatctt 10328627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 1338 - 1134
Alignment:
56 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 155  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1338 atgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 1239  T
156 tggaataacaaagttagggaaaagttacagga-----gatttaggatatatgtatagcatcatcttcaacacacctggctgatacgatgccgcagacgac 250  Q
    ||||||||||||||||||||||||||||||||     |||||||||||||  ||||| | ||||||||||||||||||||||||||||||||||||||||    
1238 tggaataacaaagttagggaaaagttacaggaacaacgatttaggatata--tatagtagcatcttcaacacacctggctgatacgatgccgcagacgac 1141  T
251 aacggcg 257  Q
    |||||||    
1140 aacggcg 1134  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 10092985 - 10092955
Alignment:
224 cctggctgatacgatgccgcagacgacaacg 254  Q
    |||||||||||||||||||||||||||||||    
10092985 cctggctgatacgatgccgcagacgacaacg 10092955  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 35574 - 35541
Alignment:
224 cctggctgatacgatgccgcagacgacaacggcg 257  Q
    ||||||||||||||||||||| ||||||||||||    
35574 cctggctgatacgatgccgcaaacgacaacggcg 35541  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 14677630 - 14677663
Alignment:
224 cctggctgatacgatgccgcagacgacaacggcg 257  Q
    ||||||||||||||||| ||||||||||||||||    
14677630 cctggctgatacgatgctgcagacgacaacggcg 14677663  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 29862969 - 29863001
Alignment:
224 cctggctgatacgatgccgcagacgacaacggc 256  Q
    ||||||||||||||||||||||| |||||||||    
29862969 cctggctgatacgatgccgcagatgacaacggc 29863001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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