View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_low_16 (Length: 275)
Name: NF1539_low_16
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_low_16 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 5188256 - 5188125
Alignment:
| Q |
13 |
ttgaaggcttgaagtttcatttacct--taaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacacatcttgcttacttccaac |
110 |
Q |
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| T |
5188256 |
ttgaaggcttgaagtttcatttacctattaaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacgcatcttgcttacttccaac |
5188157 |
T |
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| Q |
111 |
gtgtaattttaattcgatctgagttgatattc |
142 |
Q |
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| T |
5188156 |
gtgtaattttaattcgatctgagttgatattc |
5188125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 5188080 - 5188006
Alignment:
| Q |
187 |
gtagcatttgatccgcacacattttccaacatagagaaatatgttaacactgttaatattagtagcaaatgaaga |
261 |
Q |
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| T |
5188080 |
gtaggatttgatccgcacacattttccaacatagacaaatatgttaacaccatgaatattagtagcaaatgaaga |
5188006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 47668 - 47532
Alignment:
| Q |
8 |
ttaccttgaaggcttgaagtttcatttaccttaaacgcacactgcaatgttgaaacac--tgtttgaaaggtatgatatctttacacatcttgcttactt |
105 |
Q |
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| T |
47668 |
ttaccttgaagacttgaagtttcatttaccccaaatgaacactgcaacgttgaaatacaatatttgaaaggtatgatatctttacacatcttacttactt |
47569 |
T |
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| Q |
106 |
ccaacgtgtaattttaattcgatctgagttgatattc |
142 |
Q |
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| T |
47568 |
ccaacgtgtaattttaatttgatatgagttgatattc |
47532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 25133359 - 25133493
Alignment:
| Q |
8 |
ttaccttgaaggcttgaagtttcatttaccttaaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacacatcttgcttacttcc |
107 |
Q |
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|||| ||||||||||||||||||||||||| |||| |||||| ||| |||||| | | ||||||||||| | | ||||||||||| || ||||||||| |
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| T |
25133359 |
ttactttgaaggcttgaagtttcatttaccctaaagacacactacaacattgaaataatatttgaaaggtaggctgtctttacacatgttacttacttcc |
25133458 |
T |
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| Q |
108 |
aacgtgtaattttaattcgatctgagttgatattc |
142 |
Q |
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| T |
25133459 |
aacctctaattttaattcgattgaagttgatattc |
25133493 |
T |
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