View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_low_23 (Length: 210)
Name: NF1539_low_23
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 55573040 - 55572866
Alignment:
| Q |
17 |
cataggctccaacgatgaaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagacctttttatatttatggaaccatgtcatgcaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55573040 |
cataggctccaacgatgaaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagacctttttatctttatggaaccatgtcatgcaat |
55572941 |
T |
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| Q |
117 |
ttatgacacttggttcatcaaagttgtgaaagataaaaaccattacagcacataacaactagagagacagaaagg |
191 |
Q |
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| T |
55572940 |
ttatgacacttggttcatcaaagttgtgaaagataaaaaccattacagcacataacaactagagagacagaaagg |
55572866 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 33035506 - 33035433
Alignment:
| Q |
17 |
cataggctccaacgatgaaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagaccttttt |
90 |
Q |
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|||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33035506 |
cataggctcctacgaccaaaattgaagagcatgtatcaaaatgattcatttatgaattcaaacaagaccctttt |
33035433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 12080759 - 12080703
Alignment:
| Q |
34 |
aaaattgaaaagcatgtatcaaaatgattcatttatgaattcaaacaagaccttttt |
90 |
Q |
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||||||||| |||||||||||| |||||||||||||||||||||| |||||| |||| |
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| T |
12080759 |
aaaattgaagagcatgtatcaagatgattcatttatgaattcaaaaaagaccctttt |
12080703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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