View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1539_low_25 (Length: 209)

Name: NF1539_low_25
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1539_low_25
NF1539_low_25
[»] chr5 (4 HSPs)
chr5 (13-191)||(7472880-7473058)
chr5 (13-191)||(30441941-30442119)
chr5 (51-191)||(9044350-9044490)
chr5 (89-171)||(40163917-40163996)
[»] chr2 (4 HSPs)
chr2 (13-191)||(12742236-12742414)
chr2 (55-191)||(23348417-23348553)
chr2 (51-191)||(18354740-18354880)
chr2 (55-191)||(10328462-10328598)
[»] chr3 (3 HSPs)
chr3 (13-191)||(19881506-19881684)
chr3 (55-191)||(37982956-37983092)
chr3 (55-191)||(53972723-53972859)
[»] chr7 (1 HSPs)
chr7 (51-191)||(43070815-43070955)
[»] scaffold0596 (1 HSPs)
scaffold0596 (55-191)||(1202-1338)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 7472880 - 7473058
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||         || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7472880 catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 7472979  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7472980 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaac 7473058  T

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Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 30441941 - 30442119
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||         |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  30441941 catcaatggacatattggtgtgtttgaaaaaaaaataaacatatgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctat 30442040  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30442041 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaac 30442119  T

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Target: chr5; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 51 - 191
Target Start/End: Complemental strand, 9044490 - 9044350
Alignment:
Q  51 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9044490 acatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 9044391  T
Q  151 gtaatggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  9044390 gtaatggaataacaaagttagggaaaagttacaggaacaac 9044350  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
Q  89 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttag 171  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| || ||||||||||||||||||||    
T  40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

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Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 12742414 - 12742236
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||         || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12742414 catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 12742315  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12742314 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaac 12742236  T

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Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 23348417 - 23348553
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348417 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 23348516  T
Q  155 tggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||| |||||||||    
T  23348517 tggaataacaaagttagggaaaagttacaggaacaac 23348553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 18354740 - 18354880
Alignment:
Q  51 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18354740 acatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 18354839  T
Q  151 gtaatggaataacaaagttagggaaaagttataggaacaac 191  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  18354840 gtaatggaataacaaagttagggaaaagctacaggaacaac 18354880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 10328462 - 10328598
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10328462 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 10328561  T
Q  155 tggaataacaaagttagggaaaagttataggaacaac 191  Q
    |||||||||||||||||||||||| || | |||||||    
T  10328562 tggaataacaaagttagggaaaagatacatgaacaac 10328598  T

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Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 19881506 - 19881684
Alignment:
Q  13 catcaatggacatattggtgcgtttgnnnnnnnnntaaacatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctat 112  Q
    |||||||||||||||||||| |||||          ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19881506 catcaatggacatattggtgtgtttgaaaaaaaaaaaaacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat 19881605  T
Q  113 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19881606 ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaac 19881684  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 37983092 - 37982956
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37983092 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 37982993  T
Q  155 tggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||| |||||||||    
T  37982992 tggaataacaaagttagggaaaagttacaggaacaac 37982956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 53972723 - 53972859
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972723 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 53972822  T
Q  155 tggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||| |||||||||    
T  53972823 tggaataacaaagttagggaaaagttacaggaacaac 53972859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 43070815 - 43070955
Alignment:
Q  51 acatatgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43070815 acatatgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 43070914  T
Q  151 gtaatggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  43070915 gtaatggaataacaaagttagggaaaagttacaggaacaac 43070955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 1338 - 1202
Alignment:
Q  55 atgattttaaagtatcattcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1338 atgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 1239  T
Q  155 tggaataacaaagttagggaaaagttataggaacaac 191  Q
    ||||||||||||||||||||||||||| |||||||||    
T  1238 tggaataacaaagttagggaaaagttacaggaacaac 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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