View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1539_low_26 (Length: 204)

Name: NF1539_low_26
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1539_low_26
NF1539_low_26
[»] chr2 (6 HSPs)
chr2 (124-204)||(28203346-28203426)
chr2 (1-45)||(28203220-28203264)
chr2 (131-204)||(28202758-28202831)
chr2 (1-30)||(16736098-16736127)
chr2 (1-30)||(27246343-27246372)
chr2 (1-29)||(31450664-31450692)
[»] chr7 (4 HSPs)
chr7 (1-30)||(10625444-10625473)
chr7 (1-29)||(22338636-22338664)
chr7 (1-29)||(31715981-31716009)
chr7 (1-29)||(47250906-47250934)
[»] chr6 (2 HSPs)
chr6 (1-30)||(11525125-11525154)
chr6 (1-29)||(17245684-17245712)
[»] chr4 (3 HSPs)
chr4 (1-30)||(21217844-21217873)
chr4 (1-29)||(46200482-46200510)
chr4 (1-29)||(54136089-54136117)
[»] chr3 (4 HSPs)
chr3 (1-30)||(54108480-54108509)
chr3 (1-29)||(7274651-7274679)
chr3 (1-29)||(19124187-19124215)
chr3 (1-29)||(45871695-45871723)
[»] chr1 (4 HSPs)
chr1 (1-30)||(10923723-10923752)
chr1 (1-29)||(19269358-19269386)
chr1 (1-29)||(32563957-32563985)
chr1 (1-29)||(34279601-34279629)
[»] chr8 (1 HSPs)
chr8 (1-29)||(24456732-24456760)
[»] chr5 (3 HSPs)
chr5 (1-29)||(3879372-3879400)
chr5 (1-29)||(29023935-29023963)
chr5 (1-29)||(35263854-35263882)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 28203346 - 28203426
Alignment:
Q  124 ctttccctataaatcaaatagaactttctagttttttctttagactaatattgatatatactctttttaaaaattaccttt 204  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28203346 ctttccctataaatcaaatagaactttctagctttttctttagactaatattgatatatactctttttaaaaattaccttt 28203426  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28203220 - 28203264
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccttaccttttactttatag 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28203220 ttaagggaccaaaaatgcaatttagccttaccttttactttatag 28203264  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 28202758 - 28202831
Alignment:
Q  131 tataaatcaaatagaactttctagttttttctttagactaatattgatatatactctttttaaaaattaccttt 204  Q
    ||||||| |||||||| ||||||  ||||| ||||||||||||||||||| |||| ||||| ||||||||||||    
T  28202758 tataaattaaatagaagtttctatctttttttttagactaatattgatatttactttttttgaaaattaccttt 28202831  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 16736127 - 16736098
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  16736127 ttaagggaccaaaaatgcaatttagcctta 16736098  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 27246343 - 27246372
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  27246343 ttaagggaccaaaaatgcaatttagcctta 27246372  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31450692 - 31450664
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  31450692 ttaagggaccaaaaatgcaatttagcctt 31450664  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 10625444 - 10625473
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  10625444 ttaagggaccaaaaatgcaatttagcctta 10625473  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 22338636 - 22338664
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  22338636 ttaagggaccaaaaatgcaatttagcctt 22338664  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31715981 - 31716009
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  31715981 ttaagggaccaaaaatgcaatttagcctt 31716009  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 47250906 - 47250934
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  47250906 ttaagggaccaaaaatgcaatttagcctt 47250934  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 11525125 - 11525154
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  11525125 ttaagggaccaaaaatgcaatttagcctta 11525154  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 17245684 - 17245712
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  17245684 ttaagggaccaaaaatgcaatttagcctt 17245712  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 21217873 - 21217844
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  21217873 ttaagggaccaaaaatgcaatttagcctta 21217844  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 46200510 - 46200482
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  46200510 ttaagggaccaaaaatgcaatttagcctt 46200482  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54136117 - 54136089
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  54136117 ttaagggaccaaaaatgcaatttagcctt 54136089  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 54108480 - 54108509
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  54108480 ttaagggaccaaaaatgcaatttagcctta 54108509  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7274679 - 7274651
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  7274679 ttaagggaccaaaaatgcaatttagcctt 7274651  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19124215 - 19124187
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  19124215 ttaagggaccaaaaatgcaatttagcctt 19124187  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45871723 - 45871695
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  45871723 ttaagggaccaaaaatgcaatttagcctt 45871695  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 10923723 - 10923752
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctta 30  Q
    ||||||||||||||||||||||||||||||    
T  10923723 ttaagggaccaaaaatgcaatttagcctta 10923752  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19269386 - 19269358
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  19269386 ttaagggaccaaaaatgcaatttagcctt 19269358  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32563985 - 32563957
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  32563985 ttaagggaccaaaaatgcaatttagcctt 32563957  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34279601 - 34279629
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  34279601 ttaagggaccaaaaatgcaatttagcctt 34279629  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24456760 - 24456732
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  24456760 ttaagggaccaaaaatgcaatttagcctt 24456732  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 3879372 - 3879400
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  3879372 ttaagggaccaaaaatgcaatttagcctt 3879400  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29023963 - 29023935
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  29023963 ttaagggaccaaaaatgcaatttagcctt 29023935  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35263854 - 35263882
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctt 29  Q
    |||||||||||||||||||||||||||||    
T  35263854 ttaagggaccaaaaatgcaatttagcctt 35263882  T

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