View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_low_3 (Length: 609)
Name: NF1539_low_3
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 340
Target Start/End: Complemental strand, 14307981 - 14307659
Alignment:
| Q |
23 |
ggagctcggcgagcttgttcacaaacaatcaaatttgcagctgaccccaatagtgacaggttccctgctgtagtgctgacccaagccaatatgagccatg |
122 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14307981 |
ggagctcggcgagcttgttcacaaacaatcaagtttgcagctgaccccaatagtgacaggttccctgctgtagtgctgacccaagccaatatgagccatg |
14307882 |
T |
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| Q |
123 |
cccttttctgatcttcttgggaaattgcagcagccgaggctgcaactcttgctccaagcaatagtactagaaaaatgtaaacatgagattggtcaatgat |
222 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14307881 |
cccttttctgatcttcttgagaaattgcagcagccgaggctgcaactcttgctccaagcaatagtactagaaaaatgtaaacacaagattggtcaatgat |
14307782 |
T |
|
| Q |
223 |
acatcagatc-agatatctcctccaaa----gatataactaaattttttaactctaaaattctcagggataggaagaggaaatatttggagcaatgattg |
317 |
Q |
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| T |
14307781 |
acataagatcaaaatatctcctccgaagatggatataactaaattattttactgtaaaattttcaaagataggaagaggaaatatttggagcaatgattg |
14307682 |
T |
|
| Q |
318 |
taattttctatcaaacataattc |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
14307681 |
taattttctatcaaacataattc |
14307659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 337 - 600
Target Start/End: Complemental strand, 14306276 - 14306012
Alignment:
| Q |
337 |
attcacttaccagttggtacatttgaggccaaatttgataggacaaatataacgagagcaagtattgctattccactagaacgatcaactcgtgaataag |
436 |
Q |
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| T |
14306276 |
attcacttaccagttggtacatttgaagccaaatttgataggacaagtataacgagagaaagtatcgctattccactagaacgatcaactcgtgaataag |
14306177 |
T |
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| Q |
437 |
gctccatcaactcccataaagcacttggaattccagttttgttgaatccatctactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaac |
536 |
Q |
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| T |
14306176 |
gctccatcatctcccataaagcacttggaattccagttttgttgaatccatttactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaac |
14306077 |
T |
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| Q |
537 |
ctgcatcaacaagaagnnnnnnntct-aagacatttgttcaattttcaactagcaaaagaataat |
600 |
Q |
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||| |||||||||||| | ||||||||||||||||||| |||||||| ||||||||| |
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| T |
14306076 |
ctgtatcaacaagaagaaaaaaaagtcaagacatttgttcaattttgaactagcacaagaataat |
14306012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 337 - 596
Target Start/End: Original strand, 16400699 - 16400959
Alignment:
| Q |
337 |
attcacttaccagttggtacatttgaggccaaatttgataggacaaatataacgagagcaagtattgctattccactagaacgatcaactcgtgaataag |
436 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
16400699 |
attcacttaccggttggtacatttgaagccaaatttgataggacaagtataacaagagcaagtatcgctattccactagaacgatcaactcgcgaataag |
16400798 |
T |
|
| Q |
437 |
gctccatcaactcccataaagcacttggaattccagttttgttgaatccatctactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaac |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16400799 |
gctccatcaactcccataaagcacttggaattccagttttgttgaatccatctactgtgataaacattccacaaaagaatatcaaaagtgaatatgaaac |
16400898 |
T |
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| Q |
537 |
ctgcatcaacaag-aagnnnnnnntctaagacatttgttcaattttcaactagcaaaagaa |
596 |
Q |
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||| ||||||| | || ||||||| ||||||||||| ||||||||||| ||||| |
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| T |
16400899 |
ctgtatcaacatgaaaaagaaaattctaagatatttgttcaatcttcaactagcacaagaa |
16400959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 16399859 - 16400184
Alignment:
| Q |
19 |
gttcggagctcggcgagcttgttcacaaacaatcaaatttgcagctgaccccaatagtgacaggttccctgctgtagtgctgacccaagccaatatgagc |
118 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16399859 |
gttcggagctcgacgagcttgttcacaaactatcaagtttgcagctgatcccaatagtgacaggttccctgctatagtgctgacccaagccaatatgagc |
16399958 |
T |
|
| Q |
119 |
catgcccttttctgatcttcttgggaaattgcagcagccgaggctgcaactcttgctccaagcaatagtactagaaaaatgtaaacatgagattggtcaa |
218 |
Q |
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||||||||||||| |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
16399959 |
catgcccttttctcgtcttcttgggaaattgcagctgctgaagctgctactcttgctccaagcaatagtactataaaaatgtaaacacgagattggtcaa |
16400058 |
T |
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| Q |
219 |
tgatacatcagatcagatatctcctccaaa----gatataactaaattttttaactctaaaattctcagggataggaagaggaaatatttggagcaatga |
314 |
Q |
| |
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|||||||||||||| | | ||| ||| ||| ||||| ||| ||||||||||||| || ||| | | |||||||||||||||||||||||| |
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| T |
16400059 |
tgatacatcagatcgaaaaaacgctctaaagatggatgtaacttaatgttttaactctaaacttttcaagaa----aagaggaaatatttggagcaatga |
16400154 |
T |
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| Q |
315 |
ttgta----attttctatcaaacataattc |
340 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
16400155 |
ttgtaatttattttctatcaaacataattc |
16400184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 15942707 - 15942567
Alignment:
| Q |
93 |
tagtgctgacccaagccaatatgagccatgcccttttctgatcttcttgggaaattgcagcagccgaggctgcaactcttgctccaagcaatagtactag |
192 |
Q |
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||||||||| ||| ||||||| |||||| ||||| || ||||| |||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||||| |
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| T |
15942707 |
tagtgctgattcaaaccaatataagccatatcctttactcatcttattgggaaatttcagcagctgagactgcaacacttgctcaaagcaatagtactag |
15942608 |
T |
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| Q |
193 |
aaaaatgtaaacatgagattggtcaatgatacatcagatca |
233 |
Q |
| |
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|||||| ||| || |||||||||||||| ||||||||||| |
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| T |
15942607 |
taaaatgcaaatataagattggtcaatgacacatcagatca |
15942567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 16397164 - 16397237
Alignment:
| Q |
158 |
gaggctgcaactcttgctccaagcaatagtactagaaaaatgtaaacatgagattggtcaatgatacatcagat |
231 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16397164 |
gaggctgcaactcttgcgccaagcaatagtactagaaaaatgtaaacacaagattggtcaatgatacatcagat |
16397237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 16397073 - 16397145
Alignment:
| Q |
19 |
gttcggagctcggcgagcttgttcacaaacaatcaaatttgcagctgaccccaatagtgacaggttccctgct |
91 |
Q |
| |
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|||||||||||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
16397073 |
gttcggagctcgacgagcttgttcgcaaactctcaagtttgcagctgatcccaatagtgacaggttccctgct |
16397145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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