View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_low_4 (Length: 515)
Name: NF1539_low_4
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 30 - 508
Target Start/End: Original strand, 52576373 - 52576846
Alignment:
| Q |
30 |
tttatattaaagttaaaataaaagtaataacatagtgattttttataacgcagctaaaaatgaaagtaaataaatagagtaatagaccttccatgttgta |
129 |
Q |
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| T |
52576373 |
tttatattaaagttaaaataaaagtaataacatagtgatttcttataacgcagctaaaaatgaaagttaataaatagagtaatagaccttccatgttgta |
52576472 |
T |
|
| Q |
130 |
tttagaatactgatttagctagcaataatacaatacaactactgtgcatttgtgcgagtatgtacgaaaataatttcattgtctcctcggctaattctga |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52576473 |
tttagaatactgatttagctagcaataata-----caactactgtgcatttgtgcgagcatgtacgaaaataatttcattgtctcctcggctaattctga |
52576567 |
T |
|
| Q |
230 |
ccttaccatcattgaatctgcaaaggatgaaatagaaagaccttaaatcagcatgcaaaatcttactattttgatcattgtttcaaggattaagatagaa |
329 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52576568 |
ccttaccatcattgaatctgcaaaggaagaaatagaaagaccttaaaccagcatgcaaaatcttactattttgatcattgtttcaaggattaagagagaa |
52576667 |
T |
|
| Q |
330 |
cattatttcttagaagatgttgttatcttacagaatctccaagatgaacttcttgccaaattccaggggatatccaaatgggccaccaattatggctgca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52576668 |
cattatttcttagaagatgttgttatcttacagaatctccaagatgaacttcttgccaaattccaggggatatccaaatgggccaccaattatggctgca |
52576767 |
T |
|
| Q |
430 |
tcatccattgtaacctcgtacactttcgggctactttttctgtcaagtaacaagatgtaaaaaatattcagttcatctc |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52576768 |
tcatccattgtaacctcgtacactttcgggctactttttctgtcaagtaacaagatgtaaaaaatattcagttcatctc |
52576846 |
T |
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