View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_low_6 (Length: 455)
Name: NF1539_low_6
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 44005873 - 44006316
Alignment:
| Q |
1 |
ccttataattaaattagtattatgcaaagtctagaggccagaagaggnnnnnnnggaattcctagtgtcatctgcatggctatgttcttacatatccatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005873 |
ccttataattaaattagtattatgcaaagtctagaggccagaagaggaaaaaaaggaattcctagtgtcatctgcatggctatgttcttacatatccatt |
44005972 |
T |
|
| Q |
101 |
gtctttacttttgttggtattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaactgccatgtct |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005973 |
gtctttacttttgttgatattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaactgccatgtct |
44006072 |
T |
|
| Q |
201 |
atagtaattattactgtgttagctcagctgctgctgttatttttcttgttgtttctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006073 |
atagtaattattactgtgttagctcagctgctgctgttatttttc---ttgtttctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctc |
44006169 |
T |
|
| Q |
301 |
aaagcttcctgtgattaataaattttgctaattcnnnnnnnnnnnnntgtctatagtaatcggatgtttttctttgnnnnnnnctacaaccaaatgttat |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44006170 |
aaagcttcctgtgattaataaattttgctaattc-aaaaaaaaaatatgtctatagtaatcggatgtttttctttgaaaaaaactacaaccaaatgttat |
44006268 |
T |
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| Q |
401 |
tatgaaagtgatcaattgtcctgtctaaagtaacatgatgatgatgtc |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44006269 |
tatgaaagtgatcaattgtcctgtctaaagtaacatgatgattatgtc |
44006316 |
T |
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