View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1539_low_7 (Length: 454)
Name: NF1539_low_7
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1539_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Complemental strand, 45127373 - 45126934
Alignment:
| Q |
5 |
cacattcacattcacattcacttcactcacactcttctctcttattatacatcatgacactgacactaccatctttcaatacccttcttctcatcttatt |
104 |
Q |
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| T |
45127373 |
cacattcacattcacattcacttcactcacactcttctctcttattatacatcatgacactgacactaccatctttcaatacccttcttctcatcttatt |
45127274 |
T |
|
| Q |
105 |
cattccttgctatctgtctctacctatcactatccctatccctgatgcagcaacagttcaaccactcacaccaaatccatcttcatcttcaaaaggaaca |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
45127273 |
cattccttgctatctgtctctacctatccctatccctatccctgatgcagcaacagttcaaccactcacaccaaatccatcttcatctttacaaggaaca |
45127174 |
T |
|
| Q |
205 |
atccctgcctttcctgaacaagctgatgttgcaagatgccctttaagtctctcagatgaacacttgaatggaataaaaaacgcatgcagttccaaatcca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45127173 |
atccctgcctttcctgaacaagctgatgttgcaagatgccctttaagtctctcagatgaacacttgaatggaatcaaaaacgcatgcagttccaaatcca |
45127074 |
T |
|
| Q |
305 |
acaaacatgatgctgctgatgatgaacttcaccgtagccgatgttgtcctgctctagctgcgtggctatattctgcttactctgccactgctcttggtgg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45127073 |
acaaacatgatgctgctgatgatgaacttcaccgtagccgatgttgtcctgctctagctgcgtggctatattctgcttactctgccactgctcttggtgg |
45126974 |
T |
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| Q |
405 |
atttgaacatggacacactacatcctatgacatgcctttg |
444 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
45126973 |
atttgaacatggacacactacatcatatgacatgcctttg |
45126934 |
T |
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