View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1539_low_8 (Length: 426)

Name: NF1539_low_8
Description: NF1539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1539_low_8
NF1539_low_8
[»] chr7 (4 HSPs)
chr7 (14-255)||(24065138-24065379)
chr7 (329-416)||(24064977-24065064)
chr7 (65-154)||(8847595-8847683)
chr7 (333-399)||(8847891-8847957)
[»] chr3 (5 HSPs)
chr3 (14-211)||(3137718-3137917)
chr3 (14-190)||(24674357-24674533)
chr3 (330-417)||(24674669-24674756)
chr3 (97-154)||(4648325-4648381)
chr3 (351-399)||(28736569-28736617)
[»] chr8 (3 HSPs)
chr8 (17-147)||(25241930-25242064)
chr8 (90-195)||(15939554-15939658)
chr8 (35-147)||(3947522-3947633)
[»] chr5 (3 HSPs)
chr5 (17-147)||(32569526-32569656)
chr5 (101-211)||(38629649-38629757)
chr5 (347-417)||(23955380-23955450)
[»] chr1 (1 HSPs)
chr1 (17-147)||(8754416-8754546)
[»] chr2 (4 HSPs)
chr2 (87-147)||(37673541-37673601)
chr2 (73-148)||(15913627-15913702)
chr2 (348-399)||(21811104-21811155)
chr2 (137-185)||(21811309-21811357)
[»] chr6 (2 HSPs)
chr6 (333-397)||(20854051-20854115)
chr6 (351-399)||(34064987-34065035)
[»] chr4 (2 HSPs)
chr4 (348-399)||(16984796-16984847)
chr4 (137-185)||(16984594-16984642)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 24065379 - 24065138
Alignment:
Q  14 tacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatactctatgtactcacttttacatctatgagaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065379 tacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatactctatgtactcacttttacatctatgagaaa 24065280  T
Q  114 tgagactattttctattctttgctttccataacatggtatctatagtttttcttcccatttccatggcggaagttagttacagtttcattcttcatcann 213  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  24065279 tgagactattttctattttttgctttccataacatggtatctatagtttttcttcccatttccatggcggaagttagttacagtttcattcttcatcatt 24065180  T
Q  214 nnnnngcagaaatttttgcgatcttcctttgtttcttaacag 255  Q
         ||||||||||||||||| |||||||||||||| ||||    
T  24065179 tttttgcagaaatttttgcgattttcctttgtttcttcacag 24065138  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 329 - 416
Target Start/End: Complemental strand, 24065064 - 24064977
Alignment:
Q  329 atgattcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgtt 416  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065064 atgattcatcatgcctcgccaaaatcaacccgatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgtt 24064977  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 8847595 - 8847683
Alignment:
Q  65 catattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataacatggtatc 154  Q
    ||||||||||||||||| |   ||||  ||| || ||||||||||||||||||| | ||||| ||| ||||||| |||||||||||||||    
T  8847595 catattgcctataaatattgcttgtatacacattcacatctatgagaaatgagatttttttc-attatttgcttcccataacatggtatc 8847683  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 8847891 - 8847957
Alignment:
Q  333 ttcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggac 399  Q
    |||||||||| ||  || ||||||||  |||||||||| ||||| ||||| ||||||||||||||||    
T  8847891 ttcatcatgcctcatcagaatcaacctgatactgaatcagttttttacgtgcatccaagtgaaggac 8847957  T

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Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 3137917 - 3137718
Alignment:
Q  14 tacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatactctatgtactcacttttacatctatgagaaa 113  Q
    ||||||| |||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  3137917 tacttagcttaatcaagttgattaacatgtcattaggcttaatgtactttacatattgcctataaatactgaatgtactcactttcacatctatgagaaa 3137818  T
Q  114 tgagactattttctattctttgctttccataacatggtatctatag--tttttcttcccatttccatggcggaagttagttacagtttcattcttcatca 211  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||  ||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  3137817 tgagactattttctatttcttgctttccataacatggtatctagagctttttttttctcatttccatggcgggagttagttacagtttcattcttcatca 3137718  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 24674357 - 24674533
Alignment:
Q  14 tacttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatactctatgtactcacttttacatctatgagaaa 113  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  24674357 tacttagtttaatatagtagattagcatgtgactaggtttaatgtactttacatattgcatataaataccctatgtactcactttcacatctatgagaaa 24674456  T
Q  114 tgagactattttctattctttgctttccataacatggtatctatagtttttcttcccatttccatggcggaagttag 190  Q
    |||| ||||||||| ||||||||||||||||| |||||||||| || |||||||| ||||||||||| |||||||||    
T  24674457 tgagcctattttctcttctttgctttccataagatggtatctagagcttttcttctcatttccatggtggaagttag 24674533  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 24674669 - 24674756
Alignment:
Q  330 tgattcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttg 417  Q
    |||||||| |||| | |||||||||||||  ||||||||||  ||||||||||||||||||||||||||  ||||| |||||||||||    
T  24674669 tgattcattatgccttgccaaaatcaacctgatactgaatccattttctacgttcatccaagtgaaggatctaattctgttattgttg 24674756  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 4648381 - 4648325
Alignment:
Q  97 tttacatctatgagaaatgagactattttctattctttgctttccataacatggtatc 154  Q
    |||||||||||||||||||||| |  |||| ||| ||||||| |||||||||||||||    
T  4648381 tttacatctatgagaaatgagattcatttc-attatttgcttcccataacatggtatc 4648325  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 28736569 - 28736617
Alignment:
Q  351 aatcaacccaatactgaatctgttttctacgttcatccaagtgaaggac 399  Q
    ||||||||  |||||||||| || ||||||||||||||||| |||||||    
T  28736569 aatcaacctgatactgaatccgtgttctacgttcatccaagagaaggac 28736617  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 25242064 - 25241930
Alignment:
Q  17 ttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatac----tctatgtactcacttttacatctatgagaa 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    || ||||||| ||||| |||||||||||||    
T  25242064 ttagtttaatctagtagattaacatgtgattaggcttaatgtactttacatattgactaaaaataccgtatcaatgtacttactttcacatctatgagaa 25241965  T
Q  113 atgagactattttctattctttgctttccataaca 147  Q
    |||||||||||||||||| ||| |||||| |||||    
T  25241964 atgagactattttctattattttctttccgtaaca 25241930  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 15939554 - 15939658
Alignment:
Q  90 actcacttttacatctatgagaaatgagactattttctattctttgctttccataacatggtatctatagtttttcttcccatttccatggcggaagtta 189  Q
    |||||| ||| |||||||||||| |||||||||| |  |||  || ||||||||||||||||||||| ||  |||  || ||||||||||| | ||||||    
T  15939554 actcacatttccatctatgagaa-tgagactattattcatttcttactttccataacatggtatctagagccttttctctcatttccatggagaaagtta 15939652  T
Q  190 gttaca 195  Q
    ||||||    
T  15939653 gttaca 15939658  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 3947522 - 3947633
Alignment:
Q  35 ttagcatgtgattaggcttaatgtactttacatattgcctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattcttt 134  Q
    |||||||||  |||| |||| |||||||||||| ||||||||||| ||   |||||   ||||| |||||||||||||||||||  |||||| |  ||||    
T  3947522 ttagcatgtacttagtcttattgtactttacattttgcctataaaaacataatgtaactactttcacatctatgagaaatgagatcattttc-acacttt 3947620  T
Q  135 gctttccataaca 147  Q
    || ||||||||||    
T  3947621 gcattccataaca 3947633  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 32569526 - 32569656
Alignment:
Q  17 ttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatactctatgtactcacttttacatctatgagaaatga 116  Q
    ||||||| |||||||  ||||||||||||||||| |  ||||||||||||| ||| |||||||||| |  ||||||| ||||| ||||||||||||||||    
T  32569526 ttagtttgatctagtgtattagcatgtgattaggttctatgtactttacattttgtctataaatacacattgtactccctttttcatctatgagaaatga 32569625  T
Q  117 gactattttctattctttgctttccataaca 147  Q
    ||||| |||||||  ||| ||||||||||||    
T  32569626 gactactttctatcttttactttccataaca 32569656  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 38629757 - 38629649
Alignment:
Q  101 catctatgagaaatgagactattttctattctttgctttccataacatggtatctatagtttttcttcccatttccatggcggaagttagttacagtttc 200  Q
    |||||||||||||||||||||||||||||  || ||||| |||||||||||||||| ||  ||  ||| ||||||||||| | ||||| |||||| ||||    
T  38629757 catctatgagaaatgagactattttctatctttagcttttcataacatggtatctagagcatt--ttctcatttccatggagaaagtttgttacaatttc 38629660  T
Q  201 attcttcatca 211  Q
    |||||||||||    
T  38629659 attcttcatca 38629649  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 23955380 - 23955450
Alignment:
Q  347 ccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggacataattatgttattgttg 417  Q
    ||||||||||||  | |||||||| |||||||| ||||||||||| ||||| |  |||| |||||||||||    
T  23955380 ccaaaatcaaccggacactgaatccgttttctatgttcatccaagcgaaggtccaaattctgttattgttg 23955450  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 8754416 - 8754546
Alignment:
Q  17 ttagtttaatctagtagattagcatgtgattaggcttaatgtactttacatattgcctataaatactctat-gtactcacttttacatctatgagaaatg 115  Q
    |||||||||||||||  ||||||||||||||||| ||  ||||||||| |  || ||||||||||| |||| |||||  ||||| |||||||||||||||    
T  8754416 ttagtttaatctagtgtattagcatgtgattaggatttgtgtactttatacttttcctataaatac-ctattgtactatctttttcatctatgagaaatg 8754514  T
Q  116 agactattttctattctttgctttccataaca 147  Q
    ||||||||||||||  || |||||||||||||    
T  8754515 agactattttctatctttagctttccataaca 8754546  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 37673601 - 37673541
Alignment:
Q  87 tgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataaca 147  Q
    |||||||||||| |||||||||||||||||||||||||||||||  ||||||||| |||||    
T  37673601 tgtactcactttcacatctatgagaaatgagactattttctatttcttgctttccgtaaca 37673541  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 15913702 - 15913627
Alignment:
Q  73 ctataaatactctatgtactcacttttacatctatgagaaatgagactattttctattctttgctttccataacat 148  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||  |||||||| |||  |  |||||||||||||    
T  15913702 ctataaatactctatgtactctctttcacatctatgacaaatgaagctattttccatttctcactttccataacat 15913627  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 399
Target Start/End: Complemental strand, 21811155 - 21811104
Alignment:
Q  348 caaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggac 399  Q
    |||||||||||  | |||||||| |||||||| |||||||||||||||||||    
T  21811155 caaaatcaaccggacactgaatccgttttctatgttcatccaagtgaaggac 21811104  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 21811357 - 21811309
Alignment:
Q  137 tttccataacatggtatctatagtttttcttcccatttccatggcggaa 185  Q
    |||| |||| |||||||||| || ||||||| |||||||||||||||||    
T  21811357 tttcaataatatggtatctagagcttttctttccatttccatggcggaa 21811309  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 20854115 - 20854051
Alignment:
Q  333 ttcatcatgcgtcgccaaaatcaacccaatactgaatctgttttctacgttcatccaagtgaagg 397  Q
    |||| ||||| |||||||||||||||  | |||||||||||||||||||||||| | ||||||||    
T  20854115 ttcaccatgcctcgccaaaatcaaccggacactgaatctgttttctacgttcattcgagtgaagg 20854051  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 399
Target Start/End: Original strand, 34064987 - 34065035
Alignment:
Q  351 aatcaacccaatactgaatctgttttctacgttcatccaagtgaaggac 399  Q
    ||||||||  |||||||||| || ||||||||||||||||| |||||||    
T  34064987 aatcaacctgatactgaatccgtgttctacgttcatccaagcgaaggac 34065035  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 16984796 - 16984847
Alignment:
Q  348 caaaatcaacccaatactgaatctgttttctacgttcatccaagtgaaggac 399  Q
    |||||||||||  | |||||||| |||||||| |||||||||||||||||||    
T  16984796 caaaatcaaccggacactgaatccgttttctatgttcatccaagtgaaggac 16984847  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 16984594 - 16984642
Alignment:
Q  137 tttccataacatggtatctatagtttttcttcccatttccatggcggaa 185  Q
    |||| |||| |||||||||| || ||||||| |||||||||||||||||    
T  16984594 tttcaataatatggtatctagagcttttctttccatttccatggcggaa 16984642  T

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