View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15400_high_11 (Length: 319)
Name: NF15400_high_11
Description: NF15400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15400_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 36933519 - 36933205
Alignment:
| Q |
5 |
gaggagcacagaaccatcaacagaacatacaaggtaaggtaacaattaacagatagcaaaaggaaatagactcatagacacatattcttttcatacaatc |
104 |
Q |
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| T |
36933519 |
gaggaccacaaaaccatcaactgaacatacaaggtaaggtaacaattaacagatagcaaaaggaaacagactcatagacacatattcttttcatacaatc |
36933420 |
T |
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| Q |
105 |
cgagaagacgtgaagcaggtcgtttaacagctcgcatgagtagtttcatacttaagaactcagttcacccactagaaagaagtccgcaatattgaacatt |
204 |
Q |
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| T |
36933419 |
cgagaagacgtgaagcaggtcgtttaacagctcgcatgagtagtttcatacttaagaactcagttcacccactagaaagaagtccacaatattgaacatt |
36933320 |
T |
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| Q |
205 |
gaagaaagaaaattaagcactacagttagataacaaacataaaaattcttgaaggtcgacatttccccattcatggatcaaaatttagaatatcaactac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36933319 |
gaagaaagaaaattaagcactacagttagataacaaacataaaaattcttgaaggtcgacatttacccattcatggatcaaaatttagaatatcaactac |
36933220 |
T |
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| Q |
305 |
aagtttccttcatgt |
319 |
Q |
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| T |
36933219 |
aagtttccttcatgt |
36933205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 990762 - 990652
Alignment:
| Q |
72 |
agactcatagacacatattcttttcatacaatccgagaagacgtgaagcaggtcgtttaacagctcgcatgagtagtttcatacttaagaactcagttca |
171 |
Q |
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| T |
990762 |
agactcatagacacat--tattttcatacaatctgagaaaacgtgaagcaggtcgattaacagctggcatgagtagtttcatatttaagaactcagttca |
990665 |
T |
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| Q |
172 |
cccactagaaaga |
184 |
Q |
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| T |
990664 |
ccctatagaaaga |
990652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 990812 - 990760
Alignment:
| Q |
5 |
gaggagcacagaaccatcaacagaacatacaaggtaaggtaacaattaacaga |
57 |
Q |
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|||||||||| |||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
990812 |
gaggagcacaaaaccatcaacagaacatagaaggtaacgtaagaattaacaga |
990760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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