View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15400_high_3 (Length: 405)
Name: NF15400_high_3
Description: NF15400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15400_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 2467667 - 2468028
Alignment:
| Q |
13 |
cagaagaaggaattagaaatgcaatcacactttttctcacattcgctccattcgtttccaaaaccatttaagagccagcacttttcatctttcaccacct |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2467667 |
cagaagaaggaattagaaatgcaatcacactttttctcacattcgctccattcgtttccaaaaccatttaagagccagcactttttatctttcaccacct |
2467766 |
T |
|
| Q |
113 |
cacttatatcctcttccattttcccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcgggctacaacggt |
212 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2467767 |
cacttatatcctcttccatttttccccctcctactcctcgctgcaatctcaaattaccaccacgctttcaattcaccaacatttttcggtctacaacggt |
2467866 |
T |
|
| Q |
213 |
aatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatgact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467867 |
aatttcctgaacctatcttcaacttcatttcattcaattcaatgcctcaaatttattttcattttcgtatagggattcgttcgtgcttccgaggatgact |
2467966 |
T |
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| Q |
313 |
ctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtgtcttctgatgat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467967 |
ctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgtgtcttctgatgat |
2468028 |
T |
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