View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15400_high_6 (Length: 358)

Name: NF15400_high_6
Description: NF15400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15400_high_6
NF15400_high_6
[»] chr3 (10 HSPs)
chr3 (1-345)||(46404517-46404861)
chr3 (22-297)||(5004687-5004970)
chr3 (21-298)||(16975252-16975515)
chr3 (194-302)||(16475273-16475381)
chr3 (128-298)||(11967971-11968130)
chr3 (210-297)||(9104174-9104261)
chr3 (193-286)||(17542813-17542904)
chr3 (221-298)||(7337257-7337334)
chr3 (130-182)||(8730913-8730966)
chr3 (130-182)||(9082800-9082853)
[»] chr7 (12 HSPs)
chr7 (1-296)||(15873891-15874186)
chr7 (21-288)||(21491459-21491739)
chr7 (97-299)||(22077631-22077831)
chr7 (136-298)||(18367412-18367577)
chr7 (89-308)||(48576321-48576538)
chr7 (161-297)||(9993291-9993427)
chr7 (156-307)||(48654339-48654488)
chr7 (210-297)||(12196729-12196816)
chr7 (255-298)||(10289388-10289431)
chr7 (21-88)||(18367293-18367363)
chr7 (256-294)||(11036685-11036723)
chr7 (260-297)||(7503909-7503946)
[»] chr6 (10 HSPs)
chr6 (1-296)||(34636188-34636477)
chr6 (21-302)||(25005139-25005429)
chr6 (21-298)||(23260544-23260829)
chr6 (21-297)||(32450228-32450512)
chr6 (22-123)||(10751527-10751636)
chr6 (197-296)||(26182602-26182700)
chr6 (222-297)||(11166587-11166662)
chr6 (245-298)||(10751623-10751676)
chr6 (132-296)||(24992418-24992578)
chr6 (193-298)||(13777247-13777350)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-298)||(8839-9145)
[»] chr5 (4 HSPs)
chr5 (1-216)||(536895-537110)
chr5 (136-296)||(536731-536891)
chr5 (21-316)||(4557935-4558241)
chr5 (210-297)||(27026621-27026708)
[»] chr1 (10 HSPs)
chr1 (21-298)||(35762015-35762303)
chr1 (97-308)||(9537406-9537615)
chr1 (162-299)||(37667265-37667401)
chr1 (130-297)||(16074710-16074879)
chr1 (21-140)||(37667144-37667271)
chr1 (175-298)||(21264718-21264841)
chr1 (193-296)||(6835953-6836056)
chr1 (221-298)||(338059-338135)
chr1 (221-298)||(43407930-43408007)
chr1 (256-297)||(8421574-8421615)
[»] chr2 (7 HSPs)
chr2 (146-298)||(32735391-32735543)
chr2 (130-306)||(1193590-1193765)
chr2 (193-297)||(12774954-12775056)
chr2 (193-308)||(28267692-28267804)
chr2 (138-230)||(29270702-29270792)
chr2 (222-316)||(23828298-23828392)
chr2 (221-298)||(40447432-40447508)
[»] chr4 (3 HSPs)
chr4 (97-297)||(28969233-28969431)
chr4 (21-264)||(49499045-49499297)
chr4 (210-298)||(40458905-40458992)
[»] scaffold1838 (1 HSPs)
scaffold1838 (97-252)||(221-374)
[»] scaffold0120 (1 HSPs)
scaffold0120 (222-297)||(2645-2720)
[»] chr8 (5 HSPs)
chr8 (193-298)||(22816487-22816590)
chr8 (130-230)||(35839168-35839268)
chr8 (222-299)||(20264999-20265076)
chr8 (222-299)||(21051628-21051705)
chr8 (210-295)||(40841568-40841652)
[»] scaffold0002 (1 HSPs)
scaffold0002 (222-309)||(356884-356971)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 46404517 - 46404861
Alignment:
Q  1 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46404517 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa-t 46404615  T
Q  101 gtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 200  Q
    | ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404616 gccattccacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 46404715  T
Q  201 gttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatgggg-aaaaagcccttacctca 299  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46404716 gttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacctca 46404815  T
Q  300 aacgctttacctcctagtgaaaccctcaatgcacatgcatcagtct 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46404816 aacgctttacctcctagtgaaaccctcaatgcacatgcatcagtct 46404861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 5004687 - 5004970
Alignment:
Q  22 tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa--------atgtcattccacata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  5004687 tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacata 5004786  T
Q  114 acattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttct 213  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  5004787 acattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttct 5004886  T
Q  214 tttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004887 tttcaaaagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 5004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 16975515 - 16975252
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaaatgtcattccacataacatta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||                | |||||||||||||| ||||    
T  16975515 atattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaaca----------------acgtcattccacataaaatta 16975432  T
Q  120 tcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaa 219  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975431 tcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaa 16975332  T
Q  220 cagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtat-ggggaaaaagcccttacctc 298  Q
    || |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||||||    
T  16975331 caaacaagaatctctacctctaattcataacataatcctagtacttattaagaatgtatggggggaaaagcccttacctc 16975252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 16475381 - 16475273
Alignment:
Q  194 tattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccctt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | |||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt 16475282  T
Q  294 acctcaaac 302  Q
    |||| ||||    
T  16475281 accttaaac 16475273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 298
Target Start/End: Original strand, 11967971 - 11968130
Alignment:
Q  128 acatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttg--ttcttttcaacagaca 225  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||  |||||||||      |    
T  11967971 acatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagattttttgtcttcttttca------a 11968064  T
Q  226 agaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||||||||      ||||||||| |||||||||||||||| | |||||| |||||||| ||||||||||    
T  11968065 agaatctctacc------tcataacatcatcctagtacttagtatggacgtat-gggaaaaaacccttacctc 11968130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 9104261 - 9104174
Alignment:
Q  210 ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    |||||||||| ||||||||||  |||||  || || |||||| | |||||  ||||||||| |||||||||||||||| |||||||||    
T  9104261 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttacct 9104174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 286
Target Start/End: Original strand, 17542813 - 17542904
Alignment:
Q  193 atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaa 286  Q
    |||||||| |||||||  ||||||||| ||||||||||  |||||  || || |||||| | |||||  |||||||||||||||||||||||||    
T  17542813 atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaaaacttagtaagaacgtatggggaaaa 17542904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 7337257 - 7337334
Alignment:
Q  221 agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||| || |||||| ||| || || ||| | |||||| |||||||| | ||||||||||||||||||||||||||    
T  7337257 agacaagcatttctaccattacttaatgacacagtcctagcacttagtatggacgtatggggaaaaagcccttacctc 7337334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 8730966 - 8730913
Alignment:
Q  130 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 182  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  8730966 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 8730913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 9082853 - 9082800
Alignment:
Q  130 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 182  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  9082853 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 9082800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 15873891 - 15874186
Alignment:
Q  1 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873891 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 15873990  T
Q  101 gtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 200  Q
    | ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873991 gccattccacaaaacattatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 15874090  T
Q  201 gttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874091 gttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 21491459 - 21491739
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttctttac-aataccacaaaaa---catatatg--------aatagaaaaaatgtcattcc 108  Q
    |||||||||||| |||||||||||| |||| || ||||||||||| | |||||||||||||   ||||||||        |||| || |||||||||||     
T  21491459 atattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaaacatatatgcatatcaaaataaaataaatgtcattct 21491558  T
Q  109 acataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgtttt 208  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  21491559 acataacatttt-atgcacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagttttttt 21491657  T
Q  209 g--ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaag 288  Q
    |  ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||| ||||||    
T  21491658 gtcttcttttcaaccgacaagaatctctacctctaattcataacatcatcctagtacttagtatggacgtatgggaaaaaag 21491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 97 - 299
Target Start/End: Complemental strand, 22077831 - 22077631
Alignment:
Q  97 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 196  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||| |||| ||||    
T  22077831 aaatgtcattctacataacattatcatacacacatcatataaaatataattaaactaataactttttgaaatggttaaattttaccatataaatttatat 22077732  T
Q  197 tttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    |||||||||||  ||||| | ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||    
T  22077731 tttagttgttt--ttcttcttaacagacaagaatctctacctctaattcataacatcatcctagtacttagtatgaacatatgggaaaaaagcccttacc 22077634  T
Q  297 tca 299  Q
    |||    
T  22077633 tca 22077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 136 - 298
Target Start/End: Original strand, 18367412 - 18367577
Alignment:
Q  136 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagtt--gtttt-gttcttttcaacagacaagaatct 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||  |||||||||||| ||||||||||    
T  18367412 taaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttaatttggttttctttcttttcaacaaacaagaatct 18367511  T
Q  233 ctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||||||||||||||||  ||||||| |||| || | |||||| |||||||||||||||||||    
T  18367512 ctacctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacctc 18367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 89 - 308
Target Start/End: Complemental strand, 48576538 - 48576321
Alignment:
Q  89 aatagaaaaaatgtcattccacataacattatcatgcagacatcatataaaatataattaaa-ctaataacttttataaaaggttaaattttaccatatg 187  Q
    ||||||| |||||||||||  ||| |||||||||| || ||||||||||| ||||||||||| ||||||||||| |||| |  ||||||||||||||||     
T  48576538 aatagaataaatgtcattctgcatcacattatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccatata 48576439  T
Q  188 aattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaa 287  Q
    ||||||||||||| || ||||   ||||| ||| || |||||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||    
T  48576438 aattcatattttaattatttt---ctttttaacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaaaa 48576342  T
Q  288 gcccttacctcaaacgcttta 308  Q
    |||||||||| | ||||||||    
T  48576341 gcccttaccttatacgcttta 48576321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 297
Target Start/End: Complemental strand, 9993427 - 9993291
Alignment:
Q  161 ttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctag 260  Q
    ||||||||  ||| |||||||||||| |||  |||||||| ||||||| |||||||||| ||||||||||   ||||  || || |||||| |  |||||    
T  9993427 ttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaattgttacccctatttaataacaaagccctag 9993328  T
Q  261 tacttagtaagaacgtatggggaaaaagcccttacct 297  Q
     ||||||||||||||| ||||||||||||||||||||    
T  9993327 cacttagtaagaacgtgtggggaaaaagcccttacct 9993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 48654339 - 48654488
Alignment:
Q  156 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataat 255  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| |||||||||| | ||| | ||||||| ||||| ||    
T  48654339 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 48654436  T
Q  256 cctagtacttagtaagaacgtatggggaaaaagcccttacctcaaacgcttt 307  Q
    |||||||||||||| | ||||||||||||||| |||||||||| || |||||    
T  48654437 cctagtacttagtatggacgtatggggaaaaaacccttacctcgaaagcttt 48654488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 12196729 - 12196816
Alignment:
Q  210 ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    ||||||| || ||||||||||  |||||  || || |||||||| |||| | |||||||||||| |||||||||||||||||||||||    
T  12196729 ttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttacct 12196816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 10289388 - 10289431
Alignment:
Q  255 tcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    |||||| |||||||| | ||||||||||||||||||||||||||    
T  10289388 tcctagcacttagtatggacgtatggggaaaaagcccttacctc 10289431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 18367293 - 18367363
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttcttt-acaataccac--aaaaacatatatg 88  Q
    |||||||||||| |||||||||||| |||| || |||||||||||  |||||||||  |||||||||||||    
T  18367293 atattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaacatatatg 18367363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 11036685 - 11036723
Alignment:
Q  256 cctagtacttagtaagaacgtatggggaaaaagccctta 294  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  11036685 cctagcacttagtaagaacgtgtggggaaaaagccctta 11036723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 7503946 - 7503909
Alignment:
Q  260 gtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    |||||||||| | |||||||||||||||||||||||||    
T  7503946 gtacttagtatggacgtatggggaaaaagcccttacct 7503909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 34636477 - 34636188
Alignment:
Q  1 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  34636477 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacactt------aataccacaaaaacatatatgaatagaaaaaat 34636384  T
Q  101 gtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 200  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636383 gtcatgccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 34636284  T
Q  201 gttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636283 gttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 25005429 - 25005139
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||    
T  25005429 atattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccaca 25005330  T
Q  112 taacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 211  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25005329 taaaattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgtt 25005230  T
Q  212 cttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcaaac 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||| ||||    
T  25005229 cttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttaccttaaac 25005139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 23260544 - 23260829
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 111  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||    
T  23260544 atattttcatttatttagtttatcagcaaa-tctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccaca 23260642  T
Q  112 taacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 211  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23260643 taacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggctaaattttaccatatgaattcatattttagttgttttgtt 23260742  T
Q  212 cttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23260743 cttttcaagagacaagaatctctacctctaattcataacataatcctaatacttagtaagaacgtatggggaaaaagcccttacctc 23260829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 32450228 - 32450512
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 111  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||        |||||||||||||    
T  32450228 atattttcatttatttagtttatcaacaaagtctaacacttctttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 32450327  T
Q  112 taacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgtt 211  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  32450328 taacattatcatacacacatcatataaaatataattaaactaataacttttataaaaagttaaaatttaccatatgaattcatattttagttgttttgtt 32450427  T
Q  212 cttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||    
T  32450428 cttttcaacagacaagaatctctacctctaattcataacacaatcctagtacttagtaagaacgtacgggg-aaaagcccttacct 32450512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 10751527 - 10751636
Alignment:
Q  22 tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaa--------aaatgtcattccacata 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||    
T  10751527 tattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacata 10751626  T
Q  114 acattatcat 123  Q
    ||||||||||    
T  10751627 acattatcat 10751636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 296
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
Q  197 tttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    |||||||||||| ||||| |||||| ||||||||||||| || ||||||||||||| |||||| ||||||||| | || |||||||||||||||||||||    
T  26182602 tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 11166587 - 11166662
Alignment:
Q  222 gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    ||||| ||||||||||  || ||||||| |  ||||||  ||||||||||||||||||||||||||||||||||||    
T  11166587 gacaaaaatctctaccactatttcataataagatcctaacacttagtaagaacgtatggggaaaaagcccttacct 11166662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 10751623 - 10751676
Alignment:
Q  245 cataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    |||||||| ||| |||||||||||||||| |||||||||||| |||||||||||    
T  10751623 cataacattatcatagtacttagtaagaatgtatggggaaaaggcccttacctc 10751676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 296
Target Start/End: Complemental strand, 24992578 - 24992418
Alignment:
Q  132 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 231  Q
    |||||||||  |||||||| |||| | |||||||||||  ||||||||||||  | ||   |||||||| |||||||  ||||||||| | ||||||||     
T  24992578 catataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttt--tcttttcaaaa-acaagaatt 24992482  T
Q  232 tctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    ||||| | ||||||||||||||  ||||||||||| ||   || ||| |||||||||||||||||    
T  24992481 tctacttataattcataacatatccctagtacttaatatagacatat-gggaaaaagcccttacc 24992418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 13777247 - 13777350
Alignment:
Q  193 atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 292  Q
    |||||||||||||||  |||||| ||| ||| |||||| | ||| | ||||||| ||||| ||||||||| ||| || | ||||| |||||||||| |||    
T  13777247 atattttagttgttt--ttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtatttattatggacgtacggggaaaaagtcct 13777344  T
Q  293 tacctc 298  Q
    ||||||    
T  13777345 tacctc 13777350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 9145 - 8839
Alignment:
Q  1 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9145 tccacatggaccaatctgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 9046  T
Q  101 ---------gtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaatt 191  Q
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9045 aaaataaatgtcattccacataacattatcatacagacatcatataaaatataattaaactaataactgttataaaaggttaaattttaccatgtgaatt 8946  T
Q  192 catattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccc 291  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8945 catattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccc 8846  T
Q  292 ttacctc 298  Q
    |||||||    
T  8845 ttacctc 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 537110 - 536895
Alignment:
Q  1 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537110 tccacatggaccaaactgaaatattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaat 537011  T
Q  101 gtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 200  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537010 gccattccacataacattatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatatttta 536911  T
Q  201 gttgttttgttctttt 216  Q
    ||||||||||||||||    
T  536910 gttgttttgttctttt 536895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 136 - 296
Target Start/End: Complemental strand, 536891 - 536731
Alignment:
Q  136 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536891 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta 536792  T
Q  236 cctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536791 cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 4557935 - 4558241
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaa--catatatg--------aatagaaaaaatgtcattcca 109  Q
    |||||||||||| |||||||||||| |||| || |||||||||||  ||||||||||||||  ||||||||        |||| || ||| ||||||| |    
T  4557935 atattttcatttctttagtttatcaacaaaatccaacacttctttctcaataccacaaaaaaacatatatgcatatcaaaataaaataaaagtcattcta 4558034  T
Q  110 cataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttg 209  Q
    | ||||||||| || || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||     
T  4558035 cgtaacattattatacacacattatataaaatatgattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttc 4558134  T
Q  210 t-tcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcaaacgcttta 308  Q
    | |||| ||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||   |||||| |||||||||||||||||||  ||| ||||    
T  4558135 tctcttctcaacagacaagaatctctacctctaaatcataacatcatcctaatacttagtatagacgtat-gggaaaaagcccttacctcgtacgtttta 4558233  T
Q  309 cctcctag 316  Q
    ||||||||    
T  4558234 cctcctag 4558241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 297
Target Start/End: Complemental strand, 27026708 - 27026621
Alignment:
Q  210 ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    |||||||||| ||||||||||   ||||  || || |||||| |||||||| ||||||||| ||||||||||||||||||||||||||    
T  27026708 ttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacct 27026621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 298
Target Start/End: Original strand, 35762015 - 35762303
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaa--------atgtcattccaca 111  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| |||||||||        |||||||||||||    
T  35762015 atattttcatttatttagtttatctacaaagtctaacacttcattaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca 35762114  T
Q  112 taacattatcatgcagacatcatataaaatataattaaactaataactttt--ataaaaggttaaattttaccatatgaattcatattttagttgttttg 209  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  35762115 taacattatcatacacacatcatataaaatatagttaaactaataacttttttataaaaggttaaattttaccatataaattcatattttagttgttttg 35762214  T
Q  210 ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  35762215 ttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctc 35762303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 97 - 308
Target Start/End: Original strand, 9537406 - 9537615
Alignment:
Q  97 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 196  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  9537406 aaatgtcattctacataacattatcatacaaacatcatataaaatataattaaactaataacttttataaaaggttaaattttacaatataaatttatat 9537505  T
Q  197 tttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    |||| ||||||  ||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||| |||| | ||||||| || ||||||||||||     
T  9537506 tttacttgttt--ttcttctcaacagacaagaatctatacctctaattcataacatcatcctagtactcagtatggacgtatgaggtaaaagcccttact 9537603  T
Q  297 tcaaacgcttta 308  Q
    | | ||||||||    
T  9537604 tgatacgcttta 9537615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 37667265 - 37667401
Alignment:
Q  162 tataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagt 261  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  37667265 tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt 37667364  T
Q  262 acttagtaagaacgtatggggaaaaagcccttacctca 299  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  37667365 acttagtaagaacgtatggggaaaaag-ccttacctca 37667401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 130 - 297
Target Start/End: Complemental strand, 16074879 - 16074710
Alignment:
Q  130 atcatataaaatataattaaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaga 228  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||  ||||||| ||| ||||| |    
T  16074879 atcatataaaatataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgttt--ttctttttaacggacaaaa 16074782  T
Q  229 atctctacctttaattcataa---cataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    ||||||| || ||||||||||   ||| |||| ||||||||||| ||||||||||| |||||||||||||||    
T  16074781 atctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatgggaaaaaagcccttacct 16074710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 37667144 - 37667271
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaa--------aaatgtcattccacat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||| ||||||||||||    
T  37667144 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaaagtcattccacat 37667243  T
Q  113 aacattatcatgcagacatcatataaaa 140  Q
    ||||||||||| ||||||||||||||||    
T  37667244 aacattatcatacagacatcatataaaa 37667271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 298
Target Start/End: Original strand, 21264718 - 21264841
Alignment:
Q  175 attttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaac 274  Q
    |||||||||| | |||  |||||||| ||||||| |||||||||| ||||||||||  |||||  |  || || ||| |  ||||| |||||||||||||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaac 21264817  T
Q  275 gtatggggaaaaagcccttacctc 298  Q
    ||||||||||||||||||||||||    
T  21264818 gtatggggaaaaagcccttacctc 21264841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 6836056 - 6835953
Alignment:
Q  193 atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 292  Q
    |||||||| ||||||| |||||||||| ||||||||||  |||||  || || || | | |  ||||| |||||||||||||||||||||||||||||||    
T  6836056 atattttaattgttttcttcttttcaaaagacaagaattgctacccctatttaatcataaagccctagcacttagtaagaacgtatggggaaaaagccct 6835957  T
Q  293 tacc 296  Q
    ||||    
T  6835956 tacc 6835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 338135 - 338059
Alignment:
Q  221 agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||||||  |||||| || || |||||||| || ||| |||||||| | ||||||||||||||||||||||||||    
T  338135 agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacctc 338059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 43407930 - 43408007
Alignment:
Q  221 agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||| || |||||| ||| || || ||| | |||||| |||||||| | ||||||||||||||||||||||||||    
T  43407930 agacaagcatttctaccattacttaatgacacagtcctagcacttagtatggacgtatggggaaaaagcccttacctc 43408007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 8421615 - 8421574
Alignment:
Q  256 cctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    ||||| |||||||| | |||||||||||||||||||||||||    
T  8421615 cctagcacttagtatgtacgtatggggaaaaagcccttacct 8421574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 146 - 298
Target Start/End: Original strand, 32735391 - 32735543
Alignment:
Q  146 ttaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctttaattc 245  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32735391 ttaaactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 32735490  T
Q  246 ataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32735491 ataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacctc 32735543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 130 - 306
Target Start/End: Complemental strand, 1193765 - 1193590
Alignment:
Q  130 atcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaa 229  Q
    |||||||||||   ||||||| |||| ||| ||||||||  ||| | |||||||| | |||  |||||||| ||||||| |||||||||| |||||||||    
T  1193765 atcatataaaactcaattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa 1193666  T
Q  230 tctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcaaacgctt 306  Q
    |  |||||  |  || |||||| | | |||| ||||||||||||| ||| ||||||||||||||||||| |||||||    
T  1193665 ttgctacccctgtttaataacaaagtactagcacttagtaagaacttat-gggaaaaagcccttacctcgaacgctt 1193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 12774954 - 12775056
Alignment:
Q  193 atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 292  Q
    ||||||||||||||||  ||||| ||| ||| |||||| | ||| | ||||||| ||||| |||||||||||| ||| | ||||||||||||||||||||    
T  12774954 atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaagccct 12775051  T
Q  293 tacct 297  Q
    |||||    
T  12775052 tacct 12775056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 308
Target Start/End: Original strand, 28267692 - 28267804
Alignment:
Q  193 atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 292  Q
    ||||||||||||||||  ||||||||| ||| |||||| | ||| | ||||||| ||||| |||||||||||||||| | |||||| |||||||| ||||    
T  28267692 atattttagttgtttt--tcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtat-gggaaaaaaccct 28267788  T
Q  293 tacctcaaacgcttta 308  Q
    ||||| | ||||||||    
T  28267789 taccttatacgcttta 28267804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 29270792 - 29270702
Alignment:
Q  138 aaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaat 230  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||| || | | | ||||||||| ||||||  |||||||||| ||||||||||    
T  29270792 aaatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgttt--ttcttttcaaaagacaagaat 29270702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 316
Target Start/End: Original strand, 23828298 - 23828392
Alignment:
Q  222 gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcaaacgctttacctcctag 316  Q
    ||||||||| ||||||  || ||||||||| | |||||  ||||||||||||||| |||| |||||  |||||||| | ||||||||| ||||||    
T  23828298 gacaagaatttctaccactatttcataacaaagtcctaacacttagtaagaacgtgtgggaaaaaaatccttaccttagacgctttacttcctag 23828392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 40447508 - 40447432
Alignment:
Q  221 agacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||||||  |||||| || || |||||||| || ||| |||||||| | ||||||||||||||||||||||||||    
T  40447508 agacaagaattactacctctacttaataacatagtc-tagcacttagtatggacgtatggggaaaaagcccttacctc 40447432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 97 - 297
Target Start/End: Original strand, 28969233 - 28969431
Alignment:
Q  97 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 196  Q
    ||||||||||| |||||| |||||||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  28969233 aaatgtcattctacataaaattatcatacacacatcatatagaatataattaaactaataacttttataaaatgttaaattttaccatataaattaatat 28969332  T
Q  197 tttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 296  Q
    |||||||||||  ||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| | ||||||| ||||||| ||||||||    
T  28969333 tttagttgttt--ttcttctcaacagacaagaatttctacctctaattcataacatcatcctagtacttagtatggacgtatgaggaaaaaacccttacc 28969430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 21 - 264
Target Start/End: Complemental strand, 49499297 - 49499045
Alignment:
Q  21 atattttcatttatttagtttatcagcaaagtctaacacttctttac-aataccacaaaaa-catatatg--------aatagaaaaaatgtcattccac 110  Q
    |||||||||||| |||||||||||| |||| || ||||||||||| | ||||||||||||| ||||||||        |||| || ||||||||||| ||    
T  49499297 atattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaacatatatgcatatcaaaataaaataaatgtcattctac 49499198  T
Q  111 ataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgt 210  Q
     ||||||  | || || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||| |    
T  49499197 gtaacatctt-atacacacattatataaaatataattaaactaataatttttataaaaggttaaattttactatataaattcatattttagttttttttt 49499099  T
Q  211 tcttttcaacagacaagaatctctacctttaattcataacataatcctagtact 264  Q
    |||| |||||||||||||||||| |||| ||||||||||||| |||||||||||    
T  49499098 tcttctcaacagacaagaatctccacctctaattcataacatgatcctagtact 49499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 40458992 - 40458905
Alignment:
Q  210 ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 298  Q
    ||||||| || ||||||||||  |||||| || || |||||| | || ||| |||||||| | ||||||||||||||||||||||||||    
T  40458992 ttctttttaaaagacaagaattgctacctctacttaataacacagtc-tagcacttagtatggacgtatggggaaaaagcccttacctc 40458905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 97 - 252
Target Start/End: Complemental strand, 374 - 221
Alignment:
Q  97 aaatgtcattccacataacattatcatgcagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatat 196  Q
    ||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  374 aaatggcattctacataacattatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatagatttatat 275  T
Q  197 tttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacat 252  Q
    |||| || |||  ||||||| |||| ||||||||||||| || |||||||||||||    
T  274 tttaattattt--ttctttttaacaaacaagaatctctatctctaattcataacat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 2645 - 2720
Alignment:
Q  222 gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 297  Q
    ||||||||| ||||||  || || |||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  2645 gacaagaatttctaccactattttataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttacct 2720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 22816487 - 22816590
Alignment:
Q  193 atattttagttgttttgttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccct 292  Q
    |||||||| |||||||  ||||||||| ||||||||||  | |||  || || |||||| | |||||  |||||| ||||||||||||||||||||||||    
T  22816487 atattttaattgtttt--tcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaaaagccct 22816584  T
Q  293 tacctc 298  Q
    ||||||    
T  22816585 tacctc 22816590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 35839268 - 35839168
Alignment:
Q  130 atcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaa 229  Q
    |||||||||||   ||||||| |||| ||| ||||||||  ||| |||||||||| | |||  |||||||| ||||||| |||||||||| |||||||||    
T  35839268 atcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa 35839169  T
Q  230 t 230  Q
    |    
T  35839168 t 35839168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 20264999 - 20265076
Alignment:
Q  222 gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctca 299  Q
    ||||||||| ||||||  || |||| ||||  ||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  20264999 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacctca 20265076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 21051628 - 21051705
Alignment:
Q  222 gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctca 299  Q
    ||||||||| ||||||  || |||| ||||  ||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  21051628 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacctca 21051705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 40841568 - 40841652
Alignment:
Q  210 ttcttttcaacagacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttac 295  Q
    |||||||||| ||||||||||  |||||  || || |||||| | |||||  ||||||||||||||||| ||||||||||||||||    
T  40841568 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtat-gggaaaaagcccttac 40841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 356884 - 356971
Alignment:
Q  222 gacaagaatctctacctttaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctcaaacgctttac 309  Q
    ||||||||| ||||||  || |||| ||||   |||||| ||||||||||||||||||||||||||  |||||||| | |||||||||    
T  356884 gacaagaatttctaccactacttcaaaacacggtcctagcacttagtaagaacgtatggggaaaaaatccttaccttagacgctttac 356971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University