View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15400_low_1 (Length: 304)
Name: NF15400_low_1
Description: NF15400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15400_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 27 - 294
Target Start/End: Original strand, 36832586 - 36832853
Alignment:
| Q |
27 |
gtcggtgctacaaacctggtcatgaagaaatatgagaagatatttgttcggaacaccctctctagccttgactcatcaatctcctcaactgatgagcact |
126 |
Q |
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| T |
36832586 |
gtcggtgttacagacctggtcatgaagaaatatgagaagatatttgttcggaacaccctctctagccttgactcatcaatctcctcaactgatgagcact |
36832685 |
T |
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| Q |
127 |
catattgctcagcagcattgttaacaagaatatcaatgtggccataagcattaacaatctcatcaaccactttcttgcaattctcatcaaaccctaagtc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36832686 |
catattgctcagcagcattgttaacaagaatatcaatgtggccataagcattaacaatctcatcaaccactttcttgcaattctcatcaaaccctaagtc |
36832785 |
T |
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| Q |
227 |
agctgctacagccattggatccttagcatcagcactttttgcattccttaacatttctagtgtgtcct |
294 |
Q |
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| T |
36832786 |
agctgctacagccattggatccttagcatcagcactttttgcattccttaacatttctagtgtgtcct |
36832853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 247
Target Start/End: Complemental strand, 46837993 - 46837786
Alignment:
| Q |
40 |
acctggtcatgaagaaatatgagaagatatttgttcggaacaccctctctagccttgactcatcaatctcctcaactgatgagcactcatattgctcagc |
139 |
Q |
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||||||||||||||||||| |||||||| || |||| ||||||||||| || |||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
46837993 |
acctggtcatgaagaaataggagaagatgttagttctaaacaccctctcgagtcttggttcatcaatctcctcaactgaaccacactcatactgctcagc |
46837894 |
T |
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| Q |
140 |
agcattgttaacaagaatatcaatgtggccataagcattaacaatctcatcaaccactttcttgcaattctcatcaaaccctaagtcagctgctacagcc |
239 |
Q |
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|||||||| |||||||| ||||| | ||||||||||| | |||||||||| |||| | |||||||| |||||||| || | |||||||| || |||| |
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| T |
46837893 |
tgcattgttgacaagaatgtcaatacgtccataagcattgatgatctcatcaatcactcttttgcaattttcatcaaaaccaaggtcagctggtatagcc |
46837794 |
T |
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| Q |
240 |
attggatc |
247 |
Q |
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|||||||| |
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| T |
46837793 |
attggatc |
46837786 |
T |
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