View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15400_low_2 (Length: 217)

Name: NF15400_low_2
Description: NF15400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15400_low_2
NF15400_low_2
[»] chr5 (4 HSPs)
chr5 (1-187)||(1509999-1510192)
chr5 (184-217)||(6539989-6540022)
chr5 (181-217)||(37943814-37943850)
chr5 (185-217)||(40952064-40952096)
[»] chr3 (2 HSPs)
chr3 (177-217)||(45214365-45214405)
chr3 (181-217)||(50710885-50710921)
[»] chr4 (5 HSPs)
chr4 (186-217)||(49387467-49387498)
chr4 (184-217)||(41376580-41376613)
chr4 (185-217)||(22539972-22540004)
chr4 (185-217)||(32922352-32922384)
chr4 (185-217)||(52654217-52654249)
[»] chr1 (5 HSPs)
chr1 (186-217)||(26095486-26095517)
chr1 (187-217)||(27067216-27067246)
chr1 (188-217)||(32694309-32694338)
chr1 (184-217)||(34480180-34480213)
chr1 (185-217)||(5618068-5618100)
[»] scaffold0005 (1 HSPs)
scaffold0005 (184-217)||(257973-258006)
[»] chr6 (3 HSPs)
chr6 (184-217)||(9899480-9899513)
chr6 (181-217)||(1925436-1925472)
chr6 (185-217)||(17853928-17853960)
[»] chr8 (1 HSPs)
chr8 (189-217)||(43497208-43497236)
[»] chr7 (2 HSPs)
chr7 (185-217)||(19104271-19104303)
chr7 (185-217)||(45055607-45055639)
[»] chr2 (2 HSPs)
chr2 (181-217)||(26499415-26499451)
chr2 (185-217)||(30488365-30488397)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 1509999 - 1510192
Alignment:
Q  1 ttactttttattaagtattatttaaaatcactatagtttttgtttgaataaaataaacttgtctgaagtttaatatgttcatgaggtgtca-------ga 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  1509999 ttactttttattaagtattatttaaaatcactatagtttttgtttgaataaaataaacttgtctgaagtttaatatgttcatgaggtgtcacttcaatga 1510098  T
Q  94 tgagcttgacattataacctcaagacacaaagtttacatctcatatgaaaatgttgtaaaatggccataagtgtcaatattattaataataata 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1510099 tgagcttgacattataacctcaagacacaaagtttacatctcatatgaaagtgttgtaaaatggccataagtgtcaatattattaataataata 1510192  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 6539989 - 6540022
Alignment:
Q  184 aataggcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||||| |||||||||||||||||||    
T  6539989 aataggcaaaattacacttttagtcccttaactt 6540022  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 37943850 - 37943814
Alignment:
Q  181 aataataggcaaaattatacttttagtcccttaactt 217  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  37943850 aataaaaggcaaaattacacttttagtcccttaactt 37943814  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 40952064 - 40952096
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  40952064 ataggcaaaattacacttttagtcccttaactt 40952096  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 45214365 - 45214405
Alignment:
Q  177 taataataataggcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  45214365 taataataatagacaaaattacacttttagtcccttaactt 45214405  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 50710885 - 50710921
Alignment:
Q  181 aataataggcaaaattatacttttagtcccttaactt 217  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  50710885 aataaaaggcaaaattacacttttagtcccttaactt 50710921  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 217
Target Start/End: Complemental strand, 49387498 - 49387467
Alignment:
Q  186 taggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||||||||||||||||||||||    
T  49387498 taggcaaaattatacttttagtcccttaactt 49387467  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 41376580 - 41376613
Alignment:
Q  184 aataggcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||||| |||||||||||||||||||    
T  41376580 aataggcaaaattacacttttagtcccttaactt 41376613  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 22540004 - 22539972
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  22540004 ataggcaaaattacacttttagtcccttaactt 22539972  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 32922384 - 32922352
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  32922384 ataggcaaaattacacttttagtcccttaactt 32922352  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 52654249 - 52654217
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  52654249 ataggcaaaattacacttttagtcccttaactt 52654217  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 217
Target Start/End: Original strand, 26095486 - 26095517
Alignment:
Q  186 taggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||||||||||||||||||||||    
T  26095486 taggcaaaattatacttttagtcccttaactt 26095517  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 27067246 - 27067216
Alignment:
Q  187 aggcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||||||||||||||||||||||    
T  27067246 aggcaaaattatacttttagtcccttaactt 27067216  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 32694309 - 32694338
Alignment:
Q  188 ggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||||||||||||||||||||    
T  32694309 ggcaaaattatacttttagtcccttaactt 32694338  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 34480180 - 34480213
Alignment:
Q  184 aataggcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||||| |||||||||||||||||||    
T  34480180 aataggcaaaattacacttttagtcccttaactt 34480213  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 5618068 - 5618100
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  5618068 ataggcaaaattacacttttagtcccttaactt 5618100  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 258006 - 257973
Alignment:
Q  184 aataggcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||||| |||||||||||||||||||    
T  258006 aataggcaaaattacacttttagtcccttaactt 257973  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 9899513 - 9899480
Alignment:
Q  184 aataggcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||||| |||||||||||||||||||    
T  9899513 aataggcaaaattacacttttagtcccttaactt 9899480  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 1925472 - 1925436
Alignment:
Q  181 aataataggcaaaattatacttttagtcccttaactt 217  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  1925472 aataaaaggcaaaattacacttttagtcccttaactt 1925436  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 17853960 - 17853928
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  17853960 ataggcaaaattacacttttagtcccttaactt 17853928  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 43497208 - 43497236
Alignment:
Q  189 gcaaaattatacttttagtcccttaactt 217  Q
    |||||||||||||||||||||||||||||    
T  43497208 gcaaaattatacttttagtcccttaactt 43497236  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 19104271 - 19104303
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||||| |||||||||||||||||    
T  19104271 ataggcaaaattatatttttagtcccttaactt 19104303  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 45055639 - 45055607
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  45055639 ataggcaaaattacacttttagtcccttaactt 45055607  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 26499415 - 26499451
Alignment:
Q  181 aataataggcaaaattatacttttagtcccttaactt 217  Q
    |||| |||||||||||| |||||||||||||||||||    
T  26499415 aatattaggcaaaattacacttttagtcccttaactt 26499451  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 30488397 - 30488365
Alignment:
Q  185 ataggcaaaattatacttttagtcccttaactt 217  Q
    ||||||||||||| |||||||||||||||||||    
T  30488397 ataggcaaaattacacttttagtcccttaactt 30488365  T

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