View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15401_high_18 (Length: 450)

Name: NF15401_high_18
Description: NF15401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15401_high_18
NF15401_high_18
[»] chr6 (2 HSPs)
chr6 (1-433)||(33840001-33840433)
chr6 (7-421)||(33844005-33844419)
[»] chr4 (15 HSPs)
chr4 (202-266)||(36668493-36668557)
chr4 (62-138)||(15527286-15527362)
chr4 (99-147)||(18364244-18364292)
chr4 (99-147)||(36598633-36598681)
chr4 (205-240)||(35968452-35968487)
chr4 (190-240)||(35974142-35974192)
chr4 (10-48)||(36637042-36637080)
chr4 (13-79)||(55967095-55967161)
chr4 (106-147)||(35974057-35974098)
chr4 (89-142)||(36656422-36656475)
chr4 (94-146)||(18359232-18359284)
chr4 (94-146)||(36603644-36603696)
chr4 (95-147)||(38863151-38863203)
chr4 (296-416)||(55966758-55966878)
chr4 (193-249)||(55966925-55966981)
[»] chr3 (3 HSPs)
chr3 (91-146)||(25601740-25601795)
chr3 (203-249)||(25601846-25601892)
chr3 (53-146)||(25596897-25596990)
[»] chr8 (1 HSPs)
chr8 (93-147)||(35335884-35335938)
[»] chr5 (2 HSPs)
chr5 (190-240)||(19658252-19658302)
chr5 (190-240)||(19675091-19675141)
[»] chr7 (1 HSPs)
chr7 (89-146)||(44501441-44501498)
[»] chr1 (1 HSPs)
chr1 (190-251)||(42602782-42602843)


Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 33840433 - 33840001
Alignment:
Q  1 cactccgaaaacgaagaaagtgaagacagactaagtgacttacccgactgccttcttgtttacattttgtcatttttgagaatagaatacgctgttcgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33840433 cactccgaaaacgaagaaagtgaagacagactaagtgacttacccgactgccttcttgtttacattttgtcatttttgagaatcgaatacgctgttcgaa 33840334  T
Q  101 cttgcattttgtccaccagatggaaacatctttggaaacgtattccagaacnnnnnnngcattcctcaaccttattccgtggaaaagaaaagcaattttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||    
T  33840333 cttgcattttgtccaccagatggaaacatctttggaaacgtattccagaactttttttgcattcctcaactttattccgtggaaaagaaaagcaattttt 33840234  T
Q  201 cacattcgtgtctaagattttgactcttcgtgataactcagctgcattgcacattcttgattttgagtgcgatagcgattacgagtctgaactgctccaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33840233 cacattcgtgtctaagattttgactcttcgtgataactcagctgcattgcacattcttgattttgagtgcgatagcgattacgagtctgaactggtccaa 33840134  T
Q  301 aaaattttaaattacgcgtgttcccataatacacaaatccaacaattaggaatctctatttctcatgatagtgatctccttatgccatgtgtgtcctcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840133 aaaattttaaattacgcgtgttcccataatacacaaatccaacaattaggaatctctatttctcatgatagtgatctccttatgccatgtgtgtcctcat 33840034  T
Q  401 gtcgggctcttacatctctgacactttcgattt 433  Q
    ||| |||||||||||||||||| ||||||||||    
T  33840033 gtcaggctcttacatctctgacgctttcgattt 33840001  T

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Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 33844419 - 33844005
Alignment:
Q  7 gaaaacgaagaaagtgaagacagactaagtgacttacccgactgccttcttgtttacattttgtcatttttgagaatagaatacgctgttcgaacttgca 106  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||  ||| |||| |||| ||||||||    
T  33844419 gaaaacgaagaaagtgaagatagactaagtgacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgca 33844320  T
Q  107 ttttgtccaccagatggaaacatctttggaaacgtattccagaacnnnnnnngcattcctcaaccttattccgtggaaaagaaaagcaatttttcacatt 206  Q
    ||||||||||||||||||||||||| ||||||||||||||  |||       || ||||||||| |||||| ||    | ||  || ||||||| |||||    
T  33844319 ttttgtccaccagatggaaacatctctggaaacgtattcctaaacttttgttgcgttcctcaactttattctgtttggaggacgagaaatttttgacatt 33844220  T
Q  207 cgtgtctaagattttgactcttcgtgataactcagctgcattgcacattcttgattttgagtgcgatagcgattacgagtctgaactgctccaaaaaatt 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||  ||| |||||||||||||| ||| |||||||    
T  33844219 cgtgtctaagattttgactcttcgtgataactcagctgcactgcatattcttgattttgagtgtgatactgatcacgagtctgaactggtcccaaaaatt 33844120  T
Q  307 ttaaattacgcgtgttcccataatacacaaatccaacaattaggaatctctatttctcatgatagtgatctccttatgccatgtgtgtcctcatgtcggg 406  Q
    ||||||||||   ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||    
T  33844119 ttaaattacgttcgttcccataatacccaaatccaacaattaggaatctctattactcgtgatagtgatctccttatgccatgtgtgtcttcatgtctgg 33844020  T
Q  407 ctcttacatctctga 421  Q
    |||||||||||||||    
T  33844019 ctcttacatctctga 33844005  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 36668557 - 36668493
Alignment:
Q  202 acattcgtgtctaagattttgactcttcgtgataactcagctgcattgcacattcttgattttga 266  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||    
T  36668557 acatttgtgtctaagattttgactcttcgtgatagctcaactgcattgcgcgttcttgatgttga 36668493  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 15527362 - 15527286
Alignment:
Q  62 acattttgtcatttttgagaatagaatacgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaa 138  Q
    ||||||||||||||||||| |   || |||||||||||||||||||| ||||||  |||||| | ||| ||||||||    
T  15527362 acattttgtcatttttgagcactaaagacgctgttcgaacttgcattctgtccaaaagatgggagcatatttggaaa 15527286  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 18364244 - 18364292
Alignment:
Q  99 aacttgcattttgtccaccagatggaaacatctttggaaacgtattcca 147  Q
    ||||| ||||||||| || ||||||||||||||||||||||| ||||||    
T  18364244 aacttccattttgtctacaagatggaaacatctttggaaacgcattcca 18364292  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 36598681 - 36598633
Alignment:
Q  99 aacttgcattttgtccaccagatggaaacatctttggaaacgtattcca 147  Q
    ||||| ||||||||| || ||||||||||||||||||||||| ||||||    
T  36598681 aacttccattttgtctacaagatggaaacatctttggaaacgcattcca 36598633  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 35968452 - 35968487
Alignment:
Q  205 ttcgtgtctaagattttgactcttcgtgataactca 240  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35968452 ttcgtgtctaagattttgactcttcgtgatacctca 35968487  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 35974142 - 35974192
Alignment:
Q  190 aagcaatttttcacattcgtgtctaagattttgactcttcgtgataactca 240  Q
    |||||||||  || |||||||| ||||||||||||||||||||||| ||||    
T  35974142 aagcaatttgccatattcgtgtataagattttgactcttcgtgatacctca 35974192  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 36637080 - 36637042
Alignment:
Q  10 aacgaagaaagtgaagacagactaagtgacttacccgac 48  Q
    |||||||||||||||||||| || |||||||||||||||    
T  36637080 aacgaagaaagtgaagacaggctgagtgacttacccgac 36637042  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 55967161 - 55967095
Alignment:
Q  13 gaagaaagtgaagacagactaagtgacttacccgactgccttcttgtttacattttgtcatttttga 79  Q
    ||||||||||||||||||  |||||||||||||||| |  ||||  || ||||||| ||||||||||    
T  55967161 gaagaaagtgaagacagataaagtgacttacccgacagtgttctccttcacattttatcatttttga 55967095  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 35974057 - 35974098
Alignment:
Q  106 attttgtccaccagatggaaacatctttggaaacgtattcca 147  Q
    ||||||||||| ||||||| |||||| |||||||||||||||    
T  35974057 attttgtccacaagatggagacatctctggaaacgtattcca 35974098  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 36656475 - 36656422
Alignment:
Q  89 acgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgta 142  Q
    ||||||| ||||||||| | |||||||  |||||||||||||| ||||||||||    
T  36656475 acgctgtccgaacttgcgtgttgtccaagagatggaaacatctctggaaacgta 36656422  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 18359232 - 18359284
Alignment:
Q  94 gttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 146  Q
    ||||||||| ||||||||||||  || ||||| ||||||||||||| ||||||    
T  18359232 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattcc 18359284  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 36603696 - 36603644
Alignment:
Q  94 gttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 146  Q
    ||||||||| ||||||||||||  || ||||| ||||||||||||| ||||||    
T  36603696 gttcgaactggcattttgtccaaaaggtggaagcatctttggaaacatattcc 36603644  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 38863203 - 38863151
Alignment:
Q  95 ttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcca 147  Q
    ||||||||||  |||||||||  |||||||||||||| | |||||||||||||    
T  38863203 ttcgaacttgtgttttgtccaagagatggaaacatctctcgaaacgtattcca 38863151  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 416
Target Start/End: Complemental strand, 55966878 - 55966758
Alignment:
Q  296 tccaaaaaattttaaattacgcgtgttcccataatacacaaatccaacaattaggaatctctatttctcatgatagtgatctccttatgccatgtgtgtc 395  Q
    ||||||| |||||| |||| |  |||||||||||||| ||| |||||||||||  |||| |||||  |  |||| ||| |||  ||| ||||||||| ||    
T  55966878 tccaaaagattttagattatgtttgttcccataatacccaactccaacaattaaaaatcgctattcgtggtgattgtggtctagttaggccatgtgtttc 55966779  T
Q  396 ctcatgtcgggctcttacatc 416  Q
     | ||||| ||||||||||||    
T  55966778 tttatgtcaggctcttacatc 55966758  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 55966981 - 55966925
Alignment:
Q  193 caatttttcacattcgtgtctaagattttgactcttcgtgataactcagctgcattg 249  Q
    |||||| ||| || ||| |||||||||| ||||||||||||||||||| || |||||    
T  55966981 caatttgtcatatccgtatctaagatttcgactcttcgtgataactcaactacattg 55966925  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 25601740 - 25601795
Alignment:
Q  91 gctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 146  Q
    ||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||    
T  25601740 gctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 25601795  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 25601846 - 25601892
Alignment:
Q  203 cattcgtgtctaagattttgactcttcgtgataactcagctgcattg 249  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  25601846 cattcgtctctaagattttgactcttcgtgatagctcagcttcattg 25601892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 25596897 - 25596990
Alignment:
Q  53 ttcttgtttacattttgtcatttttgagaatagaatacgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 146  Q
    ||||| || ||||||||||||||||||  |   | || || |||| ||||||||||||||| || ||||||||  |||||||||||| ||||||    
T  25596897 ttcttcttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaacatattcc 25596990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 35335884 - 35335938
Alignment:
Q  93 tgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcca 147  Q
    ||||| ||||||| |||||||||  |||||||||||||| |||||||||||||||    
T  35335884 tgttcaaacttgcgttttgtccaaaagatggaaacatctatggaaacgtattcca 35335938  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 19658302 - 19658252
Alignment:
Q  190 aagcaatttttcacattcgtgtctaagattttgactcttcgtgataactca 240  Q
    |||||||||| || ||||||| |||||||||||||||||||||||| ||||    
T  19658302 aagcaattttccaaattcgtgcctaagattttgactcttcgtgatacctca 19658252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 19675141 - 19675091
Alignment:
Q  190 aagcaatttttcacattcgtgtctaagattttgactcttcgtgataactca 240  Q
    ||||||||||  | ||||||| |||||||||||||||||||||||| ||||    
T  19675141 aagcaattttcgaaattcgtgcctaagattttgactcttcgtgatacctca 19675091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 44501498 - 44501441
Alignment:
Q  89 acgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 146  Q
    |||||||||  ||||||||||||||| ||||||||||  |||||||||||||| ||||    
T  44501498 acgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 44501441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 42602843 - 42602782
Alignment:
Q  190 aagcaatttttcacattcgtgtctaagattttgactcttcgtgataactcagctgcattgca 251  Q
    ||||| |||| || ||| |||||||||||||||||||||||||||| |||| ||||| ||||    
T  42602843 aagcatttttccatatttgtgtctaagattttgactcttcgtgatacctcaactgcactgca 42602782  T

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